Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30409
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    26   7.5  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    26   7.5  

>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 181 GVYSNRYFYVTTILAFFREREKRS*VLCFSHFV 83
           G+ S  Y  +  + A F  +E R+ VLC  HFV
Sbjct: 285 GMLSGIYPAIEPVFAIFFVKEFRNFVLCKKHFV 317


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 50  VITHSNLKEHXNKMTKTKHSTSLLTFPEE 136
           V++ S+LKE  +K+ +T  S S   FPE+
Sbjct: 195 VVSSSSLKEKLHKIKRTTSSDSDTDFPEK 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,115,267
Number of Sequences: 27780
Number of extensions: 119384
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)