Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30409
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   3.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   3.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   4.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   8.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 361 NLNNYNMTTVSTHENISINVIKKL*KN 281
           N NNYN    + + N   N  KKL KN
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 361 NLNNYNMTTVSTHENISINVIKKL*KN 281
           N NNYN    + + N   N  KKL KN
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 226 KEEGEEAIFKSISRRE 273
           K+E  EAIF+SI R++
Sbjct: 298 KDESVEAIFQSILRQK 313


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 361 NLNNYNMTTVSTHENISINVI 299
           N NNYN    + ++ +  N+I
Sbjct: 337 NYNNYNNNNYNNYKKLYYNII 357


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 355 NNYNMTTVSTHENISINVIKKL*KNSTF 272
           NNYN +  + + N   N  KKL  N  +
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKLYYNINY 114


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 191 TLKWRLF*PLLLCDNHIGFL 132
           ++ W +  P+   D +IGFL
Sbjct: 50  SVSWEVHDPVTNSDTYIGFL 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 8   LVHCSQMLNSQ*ASVITHSNLKEHXNKMTKTKHSTSL 118
           L  C  + N+Q      H+N   H      +KH  SL
Sbjct: 570 LSFCEMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSL 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,856
Number of Sequences: 438
Number of extensions: 1756
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)