Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30409
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    26   7.0  
At4g30620.1 68417.m04343 expressed protein contains Pfam domain ...    26   9.2  

>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 228 FLALGKGIEKNINIKMAS 175
           FL  GKGI+K +NI M S
Sbjct: 204 FLLNGKGIDKRVNISMES 221


>At4g30620.1 68417.m04343 expressed protein contains Pfam domain
           PF02575: Uncharacterized BCR, YbaB family COG0718;
           contains similarity to complex interacting protein 9
           (CIP9)  GI: 32892212
          Length = 180

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 109 NFASHVPGRKPIWLSHKSNG*NRRHFNVYILFNSFA*S*KEEGE 240
           N A     +  +WL+ K +G N R   V  LF       KE+G+
Sbjct: 22  NAAQRSSRQNIVWLNRKQSGNNNRSLRVNGLFGGGKKDNKEDGQ 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,465,185
Number of Sequences: 28952
Number of extensions: 104340
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)