Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30408
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    29   0.19 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.33 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   0.57 
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    27   0.75 
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   1.7  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    24   7.0  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    24   7.0  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 268 SIFDYCSHSPSRPPVKKSVFLDKKLTIVFSRSFTPPSCCCA-IARSMESNLSGS 110
           ++ D   + P   PV +   LD    I+  R F PP C    +ARS++S+ S S
Sbjct: 395 ALSDLAHNIPPLLPVIQERLLDMLSKILSGRPFIPPGCPPQYVARSLKSSKSAS 448


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 66  VPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLL 182
           V   Y LN+K+N+ N PE+  S L  +       +KD+L
Sbjct: 500 VEKVYDLNSKINLKNIPEQSISRLSTLKWNEGTTIKDVL 538


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 212 FSRQKANYCVQQIFYAAFVLLCHS*EH-GIKSFRIVCHIYFSI 87
           FSR    Y V  I  A+ + LC + EH G KS R++    FS+
Sbjct: 138 FSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV 180


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 75  TYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDL 179
           +Y LN  V   N+P  FDS ++      EG ++ L
Sbjct: 123 SYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQL 157


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 69  PVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTD 218
           P  Y+L  +  + N+   F    + +    E  V DL+N   S+L+   D
Sbjct: 275 PAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVD 324


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   GFSTLAAIIEKLKYYLRNFKNKYL*LTVLIL 93
           GFSTLA  +     Y+++ K  Y+ + +L L
Sbjct: 277 GFSTLAVNVNDFTRYVKHPKTPYVQMLILPL 307


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/61 (22%), Positives = 24/61 (39%)
 Frame = -1

Query: 278 GCRKYXXXXXXXXFTATSEKVSFSRQKANYCVQQIFYAAFVLLCHS*EHGIKSFRIVCHI 99
           G RK             S K   + ++   C + IF     LL H   + +++  I C++
Sbjct: 166 GARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLRLLAHEIYNRLQANGIACNL 225

Query: 98  Y 96
           Y
Sbjct: 226 Y 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,389
Number of Sequences: 5004
Number of extensions: 18018
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)