Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30408
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0125 - 944207-945778                                             26   6.4  
02_05_0271 + 27342468-27343577                                         26   6.4  
09_01_0096 - 1411349-1411435,1411546-1411719,1412564-1412602,141...    26   8.5  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     26   8.5  

>07_01_0125 - 944207-945778
          Length = 523

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 283 SMGVESIFDYCSHSPSRPPVKKSVFLDKKL 194
           S  V  + D CS  PS PP+  + F+++K+
Sbjct: 14  SRSVSFLIDRCSSKPSSPPM-AATFMEEKI 42


>02_05_0271 + 27342468-27343577
          Length = 369

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 132 MLLAMAQQHEGGVKDLLNTIVSFLSRKTDFFTGGR 236
           M +A  + H GG  D+  T+ + +   +  F GGR
Sbjct: 333 MSMARGEHHGGGGSDMHGTLEAEMKSASSSFNGGR 367


>09_01_0096 -
           1411349-1411435,1411546-1411719,1412564-1412602,
           1414316-1414530,1415616-1415769,1416836-1417015
          Length = 282

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 268 SIFDYCSHSPSRPPVKKSVF 209
           S F+   HSPS PP K++ F
Sbjct: 12  SFFEDLPHSPSSPPSKRACF 31


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 247 HSPSRPPVKKSVFLDKKLTIVFSRSFT 167
           HSP  PP   SV+    L +   RSFT
Sbjct: 155 HSPLLPPADISVYPQTPLKVWLDRSFT 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,101,132
Number of Sequences: 37544
Number of extensions: 116735
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)