Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30408
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_455| Best HMM Match : V-set (HMM E-Value=0.031)                     27   2.9  
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     26   8.8  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 268 SIFDYCSHSPSRPP-VKKSVFLDKKLTIVFSRSFTPPSCCCAIARS 134
           S+F  CS  P+ P  VK  V + K +  +   ++ PP   C IA S
Sbjct: 143 SLFQNCSSFPAAPSNVKAKVLITKDMKPLIRLTWDPPEIACIIALS 188


>SB_455| Best HMM Match : V-set (HMM E-Value=0.031)
          Length = 196

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 210 KTDFFTGGREGEWEQ-*SKILSTP 278
           K DF +GG+  EW Q  SK+LSTP
Sbjct: 83  KDDFVSGGQLMEWFQGRSKVLSTP 106


>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/60 (21%), Positives = 24/60 (40%)
 Frame = +3

Query: 66   VPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTDFFTGGREGE 245
            VP     +T +    DP+    ++LA  ++ E   K  ++ +   +     F  GG   E
Sbjct: 1386 VPTPKNTDTNMEEPEDPDYIHCIMLARGREKEDVCKTAMDKVRQLVEEDKHFVNGGTARE 1445


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 154 CCAIARSMESNLSGSFAIFTLVLR 83
           CCA  RS+ +  +  FA FTL LR
Sbjct: 373 CCACGRSVHTCAALVFARFTLALR 396


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 116 RIVCHIYFSIKTVSHRYLFLKLRR 45
           RI+ H  +S  TV + Y  LKL R
Sbjct: 373 RIISHANYSYNTVDYDYALLKLTR 396


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 116 RIVCHIYFSIKTVSHRYLFLKLRR 45
           RI+ H  +S  TV + Y  LKL R
Sbjct: 622 RIISHANYSYNTVDYDYALLKLTR 645


>SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 60  KQVPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTI 191
           +++   Y + TKV +  + +  +  + A+A+ HE  VKDL  TI
Sbjct: 102 EELEARYIMKTKVLLRCN-QMLEGRISALAKAHEEEVKDLKKTI 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,785
Number of Sequences: 59808
Number of extensions: 129367
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)