Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30408
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical pr... 56 8e-09
AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein. 56 8e-09
AC006644-3|AAF39838.2| 491|Caenorhabditis elegans Hypothetical ... 28 1.4
L16559-8|AAA27929.2| 643|Caenorhabditis elegans Hypothetical pr... 27 2.5
AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical ... 27 2.5
AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical ... 27 2.5
AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormo... 27 3.3
U39745-6|AAA80448.2| 392|Caenorhabditis elegans Hypothetical pr... 27 4.3
AL023847-3|CAA19549.2| 309|Caenorhabditis elegans Hypothetical ... 27 4.3
AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn pro... 25 10.0
AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance t... 25 10.0
>Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical
protein F53A2.4 protein.
Length = 320
Score = 55.6 bits (128), Expect = 8e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +3
Query: 117 ERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTDFFTG 230
ERFDS+LL+MAQQ GGV ++L+ + FLSRKTDF++G
Sbjct: 5 ERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSG 42
>AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein.
Length = 320
Score = 55.6 bits (128), Expect = 8e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +3
Query: 117 ERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTDFFTG 230
ERFDS+LL+MAQQ GGV ++L+ + FLSRKTDF++G
Sbjct: 5 ERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSG 42
>AC006644-3|AAF39838.2| 491|Caenorhabditis elegans Hypothetical
protein F55A3.7 protein.
Length = 491
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 81 RLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTDFFTGG 233
+LN K+N+ P ++ + H G + L N+ + S + F GG
Sbjct: 371 KLNPKLNLLICPNIIQKLITGSLEAHTNGFRFLFNSFSRYTSLRAFFEEGG 421
>L16559-8|AAA27929.2| 643|Caenorhabditis elegans Hypothetical
protein C06E1.9 protein.
Length = 643
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 159 EGGVKDLLNTIVSFLSRKTDFF 224
EGG+ ++ N++V+ L RK+D F
Sbjct: 37 EGGLMEIFNSVVASLPRKSDSF 58
>AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical
protein DC2.7a protein.
Length = 678
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 262 FDYCSHSPSRPPVKKSVFLDKKLTIVFSRSFTPPS 158
FDY S+ P +S ++ K ++ S + TPP+
Sbjct: 292 FDYAKRIASQKPSARSCYIPKTMSATESTTTTPPA 326
>AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical
protein DC2.7c protein.
Length = 657
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 262 FDYCSHSPSRPPVKKSVFLDKKLTIVFSRSFTPPS 158
FDY S+ P +S ++ K ++ S + TPP+
Sbjct: 292 FDYAKRIASQKPSARSCYIPKTMSATESTTTTPPA 326
>AF039044-8|AAG24129.1| 717|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 83 protein.
Length = 717
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 280 MGVESIFDYCS---HSPSRPPVKKSVFLDKKLTIVFSRSFTPPSC 155
+G + +CS SPSR V S +DK + I + S+ P SC
Sbjct: 469 LGRPELILFCSLDRASPSRMIVDVSYLIDKAVNIFETPSYLPSSC 513
>U39745-6|AAA80448.2| 392|Caenorhabditis elegans Hypothetical
protein F41C6.7 protein.
Length = 392
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 214 VFLDKKLTIVFSRSFTPPSCCCAIARSMESNLSGSFAIFTLVLR 83
V + +LT V + S + C A + E + G+F IF L++R
Sbjct: 232 VLMRDQLTDVLTNSIALVAVCIAHSYWKECDFIGAFIIFLLIIR 275
>AL023847-3|CAA19549.2| 309|Caenorhabditis elegans Hypothetical
protein Y57A10C.7 protein.
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 190 IVFSRSFTPPSCCCAIARSMESNLSGSFAIFTLVLRR*VTGTCF*N 53
I+F+ SF P + I S L AIF+ VL R ++ T F N
Sbjct: 90 IIFTNSFLPATLKIIIVVSCSMALDRCLAIFSPVLYRQLSKTYFAN 135
>AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn
protein.
Length = 566
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 99 NMANDPERFDSMLLAM 146
N ANDP+ DS+LLA+
Sbjct: 193 NWANDPKTIDSLLLAV 208
>AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 8, isoform a
protein.
Length = 566
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 99 NMANDPERFDSMLLAM 146
N ANDP+ DS+LLA+
Sbjct: 193 NWANDPKTIDSLLLAV 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,200,656
Number of Sequences: 27780
Number of extensions: 102718
Number of successful extensions: 306
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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