Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30408
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    29   0.77 
At3g08760.1 68416.m01018 protein kinase family protein contains ...    28   1.4  
At1g11810.1 68414.m01357 F-box family protein contains Pfam PF00...    25   9.5  

>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
           family protein similar to 13S condensin XCAP-D2 subunit
           [Xenopus laevis] GI:3764087; contains Pfam profile
           PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 205 DKKLTIVFSRSFTPPSCCCAIARSMESNLS 116
           D+  ++V S    PPSC C +  S+ SNLS
Sbjct: 66  DRVYSLVRSFFSLPPSCKCNLVESLRSNLS 95


>At3g08760.1 68416.m01018 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 557

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 250 SHSPSRPPVKKSVFLDKKLTIVFSRSFTPPSC 155
           S SPS PP + SV   +  T+VF   F P +C
Sbjct: 499 SFSPSPPPRRPSVSPTRGRTLVFPPVFPPRAC 530


>At1g11810.1 68414.m01357 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; EST gb|AA605362 comes
           from this gene
          Length = 377

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 191 YCVQQIFYAAFVLLCHS*EHGIKSFRIVCHIYF-SIKTVSHRYLF 60
           + + Q+F+   +L C S  H      +VC++Y    + + +R LF
Sbjct: 92  FAISQLFHCDGLLFCISNNHYSNYTLMVCNMYLGETRLIQNRSLF 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,797,948
Number of Sequences: 28952
Number of extensions: 95647
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)