Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30407
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.068
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   1.9  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   2.5  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    25   3.4  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   4.4  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   5.9  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    24   5.9  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.068
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 210 MTNSTIGYP*VVPLGMSMC*GHPQPQKSNSADSGDPGLPGLSA 82
           M N  +  P +VP GM++  G P P     A    PG+PG +A
Sbjct: 514 MPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATA 556


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 180 LKDILWCCSSWCPTGT 227
           L D +WCCSS  PT T
Sbjct: 149 LVDGIWCCSSDFPTAT 164


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 205 EQHHRISLSGSLGYEHVLRPPAAAEVKLGRLGRSRITWP 89
           +  H   L GSL  + + +P    +++L   G+SR  WP
Sbjct: 92  QSEHSAVLRGSLCIQ-IYKPVKLKKIQLSFKGKSRTEWP 129


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 196 GAVRHGVQLER*PGGARPGGSCN 264
           GAV  GV L      A+P GSC+
Sbjct: 188 GAVNRGVNLSEARPAAQPSGSCS 210


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 247 PGGSCNDAASYCGIRDRKXPDRRAMG 324
           PGGS  D A+Y  +RD +   + + G
Sbjct: 49  PGGSVKDRAAYYVVRDAEKKGKLSRG 74


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 141 AGGLSTCSYPREPLKDILWCCSSWCPT 221
           +G +     P EP+   + CC    PT
Sbjct: 5   SGSMGVAFQPSEPIASTILCCECGVPT 31


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 254 PPGLAPPGHRSSWTP*RTA-P*DILEWFP 171
           PP +  P +R  W+P     P  I EW+P
Sbjct: 337 PPMIRNPNYRGPWSPPMIPNPEFIGEWYP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,995
Number of Sequences: 5004
Number of extensions: 30129
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)