Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30407
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     28   1.8  
SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.4  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   27   3.2  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   5.5  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5)                     26   7.3  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 250 QVLLHPVIVPVGHHDEQHHRISLSGSLGYEHVLRPPAAAEVK 125
           +++LHP   P  +HD     I L+  L Y   +RP     +K
Sbjct: 184 RIILHPKYAPHNNHDYDVALIKLASPLQYNDRVRPVCLPSLK 225


>SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 147 HPQPQKSNSADSGDPGLPGLSAWLLNVLS 61
           H  PQ  NS DS  P L G    LLN++S
Sbjct: 140 HLNPQGINSTDSIVPNLRGFKMALLNIVS 168


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 343 RAXRTGSPWRAGPGTCGRGCRSTTPRHCTTHQVLLHPVIVPVGHHDEQ 200
           RA  TG+P   G       CR T  +H   H +L      PV HHD+Q
Sbjct: 339 RAFSTGNPINTGNPAV---CRRTWTKHDRHHSILS-----PVVHHDKQ 378


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 317 ARRSGXLRSRMPQYDAASLHDPPGLAPP 234
           ++RS      +P+ D   +HDPP   PP
Sbjct: 508 SKRSSAQNLNLPELDPPVVHDPPAPDPP 535


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 19/69 (27%), Positives = 25/69 (36%)
 Frame = +2

Query: 2    KPGNNTXXXXXXXXXXTVPFERTFSNQADRPGNPGSPESAEFDFCGCGWPQHMLIPKGTT 181
            KP   T          T P+E    N +D     GS   A+  FC     + +  PK T+
Sbjct: 815  KPSIVTLIPSDDDEKLTAPYENKTLNASDAVAGEGSNAEAKSGFCNHVNDERVKEPKATS 874

Query: 182  QGYPMVLFV 208
                  LFV
Sbjct: 875  TFTRCQLFV 883


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 150 GHP-QPQKSNSADSGDPGLPG 91
           G P +PQ+    D G PGLPG
Sbjct: 591 GFPGEPQRGEPGDPGRPGLPG 611


>SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5)
          Length = 405

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 301 TCGRGCRSTTPRHC 260
           TCG GC+S  PR C
Sbjct: 122 TCGFGCKSRAPRLC 135


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 310 GPGTCGRGCRSTTPRHCTT 254
           G GTCG+GCR T+ + C T
Sbjct: 253 GWGTCGKGCR-TSGKGCGT 270


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 232  PGGARPGGSCNDAASYC-GIRDRKXPDRRAMG 324
            PG A P GSC DA  YC G    K P   A G
Sbjct: 1556 PGLAAPNGSC-DAGYYCSGRAILKNPTGEAYG 1586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,197
Number of Sequences: 59808
Number of extensions: 287052
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)