Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30407
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-5|CAA87378.1| 402|Caenorhabditis elegans Hypothetical pr... 30 0.52
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 3.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 3.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 3.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 3.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 3.7
Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 27 4.9
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 26 6.4
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 26 6.4
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 26 6.4
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z66495-10|CAI79135.1| 68|Caenorhabditis elegans Hypothetical p... 26 6.4
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 26 6.4
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 26 6.4
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 26 6.4
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 26 6.4
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 26 6.4
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 26 6.4
U50072-3|AAY86254.1| 68|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 26 6.4
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical p... 26 8.5
Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL132876-24|CAE17987.1| 405|Caenorhabditis elegans Hypothetical... 26 8.5
AB011281-1|BAA24961.1| 254|Caenorhabditis elegans GAP-2-5 protein. 26 8.5
>Z47075-5|CAA87378.1| 402|Caenorhabditis elegans Hypothetical
protein E02H1.3 protein.
Length = 402
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 99 IRDLPSLPSLTSAAAGGLST--CSYPREPLKDILWCCSSWCPTGTMTGWSKTWWVVQ*RG 272
++ PS P T A+ L C Y E D+ W + T+TG KTW Q R
Sbjct: 275 LKKYPSRPQYTLASDTPLCLFDCGYKSE---DVEWKVHDYTLKSTVTGLQKTWATYQARS 331
Query: 273 VVLRHPRPQVPGPA 314
++ + ++ G A
Sbjct: 332 RMMENMLGELTGMA 345
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 GHPQPQKS-NSADSGDPGLPGL 88
G P P+ N A G PGLPGL
Sbjct: 715 GEPAPENQVNPAPPGQPGLPGL 736
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 GHPQPQKS-NSADSGDPGLPGL 88
G P P+ N A G PGLPGL
Sbjct: 714 GEPAPENQVNPAPPGQPGLPGL 735
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 GHPQPQKS-NSADSGDPGLPGL 88
G P P+ N A G PGLPGL
Sbjct: 714 GEPAPENQVNPAPPGQPGLPGL 735
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 GHPQPQKS-NSADSGDPGLPGL 88
G P P+ N A G PGLPGL
Sbjct: 715 GEPAPENQVNPAPPGQPGLPGL 736
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 GHPQPQKS-NSADSGDPGLPGL 88
G P P+ N A G PGLPGL
Sbjct: 751 GEPAPENQVNPAPPGQPGLPGL 772
>Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical
protein F53F4.6 protein.
Length = 365
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 ILWCCSSWCPTGTMTGWS-KTWWVVQ*RGVVLRHPRPQVPGPARH 320
ILWC + + TM+ + + +V Q R +V+ P PQ P P H
Sbjct: 70 ILWCFHNNTDSHTMSDQANRVVYVEQRRHIVVNSP-PQSPTPLHH 113
>Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical
protein F54C9.4 protein.
Length = 287
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 144 PQPQKSNSADSGDPGLPG 91
P Q AD+G PGLPG
Sbjct: 249 PDGQPGRDADNGQPGLPG 266
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 89 RPGNPGSPESAEFDFCGCGWPQ 154
R NPG +++ F GCGW Q
Sbjct: 811 RKANPGMVKTSRPGFRGCGWRQ 832
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1461 DEPGKPGRPEITDFD 1475
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1990 DEPGKPGRPEITDFD 2004
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1671 DEPGKPGRPEITDFD 1685
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1461 DEPGKPGRPEITDFD 1475
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1990 DEPGKPGRPEITDFD 2004
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 1671 DEPGKPGRPEITDFD 1685
>Z66495-10|CAI79135.1| 68|Caenorhabditis elegans Hypothetical
protein C36A4.11 protein.
Length = 68
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 235 GGARPGGSCNDAASYCGIRD 294
GG+ G C+D++ YC I D
Sbjct: 18 GGSTESGECSDSSFYCDIFD 37
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1315 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1351
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1349 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1385
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1286 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1322
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1420 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1456
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1315 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1351
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical protein
F45E10.1a protein.
Length = 1583
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1349 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1385
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical protein
F45E10.1d protein.
Length = 1520
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1286 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1322
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical protein
F45E10.1c protein.
Length = 1654
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1420 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1456
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical protein
F45E10.1e protein.
Length = 1234
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1000 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1036
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 86 DRPGNPGSPESAEFD 130
D PG PG PE +FD
Sbjct: 880 DEPGKPGRPEITDFD 894
>U50072-3|AAY86254.1| 68|Caenorhabditis elegans Hypothetical
protein K06B9.6 protein.
Length = 68
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 235 GGARPGGSCNDAASYCGIRD 294
GG+ G C+D++ YC I D
Sbjct: 18 GGSTESGECSDSSFYCDIFD 37
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 163 EHVLRPPAAAEVKLGRLGRSRITWPVSLVAECPLKRN 53
E +LR + V L + ++RI + VS+ A PL+ N
Sbjct: 1349 EKILRSKESCIVILDNIPKNRIAFVVSVFANVPLQNN 1385
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 192 LWCCSSWCPTGTMTGW-SKTWWVVQ*RGVVLRHPRPQVPGPAR 317
L C+ G G+ + WW ++ GVV H P V G +R
Sbjct: 279 LLSCNQHRQKGCEGGYLDRAWWYIRKLGVVGDHCYPYVSGQSR 321
>Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical
protein ZK899.8e protein.
Length = 1048
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 YGAVRHGVQLER*PGGARPGGSCNDAASYCG 285
YG+VR + E GGA+ GG D + G
Sbjct: 11 YGSVRDAIHDETNSGGAQVGGESLDRRGWSG 41
>Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical
protein ZK899.8e protein.
Length = 1048
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 YGAVRHGVQLER*PGGARPGGSCNDAASYCG 285
YG+VR + E GGA+ GG D + G
Sbjct: 11 YGSVRDAIHDETNSGGAQVGGESLDRRGWSG 41
>AL132876-24|CAE17987.1| 405|Caenorhabditis elegans Hypothetical
protein Y105E8A.29 protein.
Length = 405
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 202 QHHRISLSGSLGYEHVLRPPAAAE 131
++HR+S+S S+ EH PP ++
Sbjct: 90 KNHRLSISSSINTEHSQSPPPKSQ 113
>AB011281-1|BAA24961.1| 254|Caenorhabditis elegans GAP-2-5 protein.
Length = 254
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 YGAVRHGVQLER*PGGARPGGSCNDAASYCG 285
YG+VR + E GGA+ GG D + G
Sbjct: 11 YGSVRDAIHDETNSGGAQVGGESLDRRGWSG 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,902
Number of Sequences: 27780
Number of extensions: 207105
Number of successful extensions: 854
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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