Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30407
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative...    29   0.64 
At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative...    29   0.64 
At5g51130.1 68418.m06340 expressed protein contains similarity t...    28   1.5  
At4g32730.2 68417.m05680 myb family transcription factor identic...    28   2.0  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    28   2.0  
At1g24420.1 68414.m03077 transferase family protein similar to d...    27   3.4  
At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila...    26   6.0  
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s...    26   6.0  
At3g57860.1 68416.m06450 expressed protein                             26   7.9  

>At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 525

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 102 GLPGLSAWLLNVLSNGTVTEESTLRRRTV 16
           GL GL  W+LN   NGT  E   ++ R++
Sbjct: 483 GLGGLKPWVLNKAENGTAHEPYCVKARSI 511


>At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 493

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 102 GLPGLSAWLLNVLSNGTVTEESTLRRRTV 16
           GL GL  W+LN   NGT  E   ++ R++
Sbjct: 451 GLGGLKPWVLNKAENGTAHEPYCVKARSI 479


>At5g51130.1 68418.m06340 expressed protein contains similarity to
           unknown protein (pir||T26512)
          Length = 318

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 WCCSSWCPTGTMTGWSKTWWVVQ*RGVVLRHPRP 296
           W   +W   G +T +SK W ++Q  G+ +  P+P
Sbjct: 221 WVHLNWGDDGLITLFSKIWRLLQPGGIFVMEPQP 254


>At4g32730.2 68417.m05680 myb family transcription factor identical to
            PC-MYB1 GI:5678826 from [Arabidopsis thaliana];
          Length = 995

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 86   DRPGNPGSPESAEFDFCGCGWPQHMLIPKGTTQGY 190
            D+ GN    E    DF  CG P    +P  +  GY
Sbjct: 949  DQLGNRSQVECRALDFSDCGTPGKAKVPSASPGGY 983


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +3

Query: 147 GLSTCSYPREPL-KDILWCCSSWCPTGTMTGWSKTWWV 257
           GL     PR    K     CS  CPTG   G   TW V
Sbjct: 389 GLDVTIVPRNSTEKHYCGSCSYGCPTGEKRGTDSTWLV 426


>At1g24420.1 68414.m03077 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034],
           acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
           concinna][GI:6166330][PMID:10588064]
          Length = 436

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
 Frame = +3

Query: 192 LWCCSSWCPTGTMT---GWSKTWWV 257
           LW  +SWC  G      GW K  WV
Sbjct: 357 LWMSNSWCKLGLYDADFGWGKPVWV 381


>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
           to gibberellin 20-oxidase GI:1109695, GI:9791186
          Length = 378

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 244 RPGGSCNDAASYCGIRDRKXPDRRAMGFPF 333
           +PG SC  A+S+ G    K P +  + F F
Sbjct: 127 KPGESCGYASSFTGRFSTKLPWKETLSFQF 156


>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
           similar to cytosolic aminopeptidase P from [Homo
           sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 569

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 114 SGDPGLPGLSAWLLNVLSNG 55
           +G+PG+P  S W+ +VL+ G
Sbjct: 3   AGNPGVPTASEWIADVLAPG 22


>At3g57860.1 68416.m06450 expressed protein
          Length = 243

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 66  GHSATRLTGQVIRDLPSLPSLTSAAAGGLSTCSYPREPLKDI 191
           GH+  RL  Q   ++P + +      GGL    YPR PL+DI
Sbjct: 71  GHTPFRLP-QGRENMP-IVTARRGRGGGLLPSWYPRTPLRDI 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,598,682
Number of Sequences: 28952
Number of extensions: 189610
Number of successful extensions: 566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)