Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30405
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    91   1e-19
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   2.7  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   3.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.2  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   8.2  

>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 38/92 (41%), Positives = 59/92 (64%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           + +  + +++ G L+  + ++ESTW +++   L+I+LEK NKM WW  ++   P I    
Sbjct: 48  INVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGS 107

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKKWD 276
           I PE SKLSDLD ETR  VEKMM ++ +K+ D
Sbjct: 108 IEPENSKLSDLDEETRATVEKMMLEQSQKRTD 139



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 249 VRQRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
           V +   E     +DEQK+++VL+ FM+QHPE+DFS
Sbjct: 126 VEKMMLEQSQKRTDEQKRKDVLQNFMKQHPELDFS 160


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 324 MEQHPEMDFSKCNSTKVLINIINLK-YT*PPVTLYIHCCSCFNIFFASG 467
           ++   E+DF K  S K+L  + N+  Y  P      HC  C NIF + G
Sbjct: 173 LDVQKEIDFCKKASIKILGIVENMSGYICP------HCADCTNIFSSGG 215


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 220 ETRGLVEKMMYDRDRKKWDYLQVMNKRNKKYSRNSWNNIQRWTS 351
           E R + E ++Y   ++KW Y    +     Y R  +    RW S
Sbjct: 434 EERLVNENIIYKEKKRKWIYFTNKSPEMVSYLREKYFTPSRWIS 477


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 148  VTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDRDRKKWD 276
            VT D  +S  + +    +  DLD E   + E +    + K WD
Sbjct: 3963 VTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWD 4005


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +3

Query: 66  VHVGVAGWTQSTYQLRKGEQNELVGSACYNGP--RNIY 173
           + V V GW          ++N+  G   YN P  RN+Y
Sbjct: 68  IPVHVVGWLMGPNGWNFDKENDSTGDPLYNSPYLRNLY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,463
Number of Sequences: 5004
Number of extensions: 46360
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)