Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30405
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 109 1e-24
02_05_0720 - 31213391-31213617,31213724-31213772,31213898-312140... 65 3e-11
02_02_0351 + 9257204-9261388 34 0.073
08_01_0674 + 5835592-5835649,5835750-5835856,5835953-5836019,583... 29 2.1
10_08_0248 + 16161518-16163437 29 3.6
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 29 3.6
09_02_0548 - 10467342-10468810,10470309-10471632 28 6.3
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 28 6.3
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 27 8.4
08_01_0532 - 4611650-4612706,4613405-4613757 27 8.4
01_05_0291 - 20515206-20516262,20516961-20517313 27 8.4
01_04_0042 - 15372198-15373037 27 8.4
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 109 bits (263), Expect = 1e-24
Identities = 49/90 (54%), Positives = 67/90 (74%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
VG+KGQP IIDGEL VK+++ W ++DG++L I L K N+M WW +V DPE+ T+K
Sbjct: 186 VGLKGQPPIIDGELFKPVKVDDCFWSIEDGKSLSILLTKQNQMEWWKSVVKGDPEVDTQK 245
Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
+ PE SKL+DLD ETR VEKMM+D+ +K+
Sbjct: 246 VEPENSKLADLDPETRQTVEKMMFDQRQKQ 275
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +3
Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
QRQK+MGLPTSDE +KQ++LKKFM QHPEMDFS
Sbjct: 271 QRQKQMGLPTSDEMQKQDMLKKFMAQHPEMDFS 303
>02_05_0720 -
31213391-31213617,31213724-31213772,31213898-31214076,
31215861-31216110
Length = 234
Score = 65.3 bits (152), Expect = 3e-11
Identities = 33/100 (33%), Positives = 53/100 (53%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
VG+KG IIDGEL VK+ + W ++DG L I L K N+ WW ++ DPE+ R
Sbjct: 133 VGLKGCSFIIDGELFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELDPRD 192
Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKR 300
+ + +L D D E + + +++ K ++ M+ R
Sbjct: 193 M--KVPELRDCDVEAKETIVRILSHGLPKAMNFCPFMHNR 230
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 34.3 bits (75), Expect = 0.073
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +1
Query: 40 LDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDL-D 216
L D+ + +L + L N+ + KM + RL + + R I E S+L DL D
Sbjct: 702 LPKDINHLVNLCLLNARKELCSNIPGIGKMKYLQRL--EEYHVKKRDIGFELSELGDLTD 759
Query: 217 GETRGLVEKMMYDRDRKKWDYLQVMNKRNKKYSRNSWNNIQRWTSPNAIQ 366
E + + R++ + ++M+KRN K +W +QR T + ++
Sbjct: 760 LEGELKIFNLEKVATREEANKAKLMSKRNMKKLELAWGMVQRTTRSDVLE 809
>08_01_0674 +
5835592-5835649,5835750-5835856,5835953-5836019,
5836244-5836481,5836570-5836720,5836829-5837173
Length = 321
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 IIDGELDADVKIEESTWVLQDGRNLLINLEKV--NKMNWWGRLVTTDPEISTRKINPEPS 198
IID +++ DV +EE+ L+ G + K+ N +N +++T + +++T +I +PS
Sbjct: 220 IIDADIEDDVDVEEACRFLKVGLLCTQDAMKLRPNMIN-IVQMLTGEKDVNTERIT-KPS 277
Query: 199 KLSDLDGETRGLVEKMMYD 255
+ DL G+ RG ++ D
Sbjct: 278 VVGDL-GDLRGSSQQRPID 295
>10_08_0248 + 16161518-16163437
Length = 639
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +1
Query: 49 DVKIEESTWVLQDGRNLLI--NLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGE 222
D+K+ + L+D ++ LI V N+W R+ E T + P L +
Sbjct: 434 DIKV--TPMQLRDVKDTLIMRKFGNVEPDNFWSRVC----EGETEAVIKRPWYLL---WK 484
Query: 223 TRGLVEKMMYDRDRKKWDYLQVMNKRNKK-YSRNSWNNIQRWTSPNAI 363
+R L+E + R WD+ V R +K ++ W N+ R TSP+++
Sbjct: 485 SRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTSPDSL 532
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 121 NKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYD 255
N+ NWW + T P I S D + R L+E++ D
Sbjct: 461 NQPNWWRQSNKTIPRIGLSSSTDSKPDFSGNDAKVRNLIEELKSD 505
>09_02_0548 - 10467342-10468810,10470309-10471632
Length = 930
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +1
Query: 67 STWVLQDGRNLLINLEKVNKMNWWGR----LVTTDPEISTRKINP 189
S W + D R L+ L K K NW R LV +P K+ P
Sbjct: 147 SRWEIVDSRGSLLLLAKKKKSNWMRRCFPDLVVCEPVTRRHKVIP 191
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 75 GVAGWTQSTYQLRKGEQNELVGSACYNGPRNI 170
G+ Q T +R+G +VG A YN P N+
Sbjct: 228 GITTIDQVTASIRQGAHRVMVGRAAYNNPWNM 259
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 288 DEQKKQEVLKKFMEQHPEMDFSKCNSTKVLINIINLKYT*PPVTLYIHCCSCFNIF 455
DE+ ++++ + E FS S + ++YT P+ Y CC IF
Sbjct: 65 DEELTEQIIARDFRVSWEHRFSPRYSFHDTTTVSPMRYTEGPIPRYACCCDALQIF 120
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 289 MNKRNKKYSRNSWNNIQRWT 348
+ KRN K ++ W+ I RWT
Sbjct: 225 LRKRNLKQCKDRWHKINRWT 244
>01_05_0291 - 20515206-20516262,20516961-20517313
Length = 469
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 289 MNKRNKKYSRNSWNNIQRWT 348
+ KRN K ++ W+ I RWT
Sbjct: 225 LRKRNLKQCKDRWHKINRWT 244
>01_04_0042 - 15372198-15373037
Length = 279
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 289 MNKRNKKYSRNSWNNIQRWT 348
+ +RN K ++ WN I +WT
Sbjct: 119 LRRRNAKQCKDRWNKINKWT 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,293,833
Number of Sequences: 37544
Number of extensions: 268720
Number of successful extensions: 639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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