Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30405
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44) 63 1e-10
SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20) 28 6.5
SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032) 28 6.5
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 27 8.6
>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
Length = 376
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/87 (36%), Positives = 51/87 (58%)
Frame = +1
Query: 10 KGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINP 189
KG +++DG+L VK EE W L+ G+ + INLEK + +W ++ DPEI KI+
Sbjct: 138 KGSTILVDGQLQRHVKCEECMWSLEPGKCVAINLEKTEE-RFWTTVIKGDPEIDRTKID- 195
Query: 190 EPSKLSDLDGETRGLVEKMMYDRDRKK 270
+ D D +T+ E++MYD +K+
Sbjct: 196 TTRDIHDFDEQTQTDYEQVMYDYRQKQ 222
>SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +3
Query: 240 KDDVRQRQKEMGLPTSDEQKKQEVLKKFMEQHPEM 344
KD V Q++MGLPTSDEQKKQ+VLKK P +
Sbjct: 183 KDVVVDIQQKMGLPTSDEQKKQDVLKKTNTAKPNV 217
>SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 270 MGLPTSDEQKKQEVLKKFMEQHPEM 344
MGLPTSDEQKKQ+VLKK P +
Sbjct: 1 MGLPTSDEQKKQDVLKKTNTAKPNV 25
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEK 117
+G+KG P IIDG+ A V +E W L + L+K
Sbjct: 299 LGVKGSPPIIDGDFYAPVLPDECIWTFDGPGVLQMTLQK 337
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 13 GQPLIIDGELDADVKIEESTWVLQDGRNLLIN----LEKVNKMN 132
G PL +DG D K++E ++ G+N+ IN LE ++++N
Sbjct: 3437 GPPLEVDGIDKLDGKVQEKNTAVESGQNIAINFAEGLEPIHELN 3480
>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
Length = 704
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 139 GRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKRNKKYSR 318
GRL T EI T+K L D G RG++ ++ + D + +R K +
Sbjct: 12 GRLKTKLVEILTQKDGKGLQMLDDDFGGVRGIIHRLQTSSKKGILDTSDALARRTKSFGS 71
Query: 319 N 321
N
Sbjct: 72 N 72
>SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 187 PEPSKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNK 297
P+ ++ LDGE RG++E D K Y QV+N+
Sbjct: 32 PQYRAMARLDGEIRGILEDTSLPIDVKVRRYEQVLNQ 68
>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 109 LEKVNKMNWWGRLVTTDPEISTRKINPEPSK 201
+EKV K W R T P +T +++ EPSK
Sbjct: 100 IEKVGKETWLPRSHTWTPLSATPQVDQEPSK 130
>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
Length = 524
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 268 KWDYLQVMNKRNKKYSRNSWNNIQRWTS 351
+W L V RN+ +R WN I+ W +
Sbjct: 363 EWPGLSVTLARNQALTRTGWNEIRDWNT 390
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 303 QEVLKKFMEQHPEMDFSKCNSTKVLIN 383
+EV K+++ HP DF+K N KV I+
Sbjct: 354 KEVKSKYLDSHPSFDFTK-NPLKVKIS 379
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 303 QEVLKKFMEQHPEMDFSKCNSTKVLIN 383
+EV K+++ HP DF+K N KV I+
Sbjct: 354 KEVKSKYLDSHPSFDFTK-NPLKVKIS 379
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,475
Number of Sequences: 59808
Number of extensions: 319846
Number of successful extensions: 1066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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