Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30405
         (589 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear migr...   147   8e-36
AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p pro...   147   8e-36
AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA...   147   8e-36
BT023804-1|AAZ66311.1|  306|Drosophila melanogaster RE67940p pro...    56   5e-08
AE014297-2393|AAN13748.2|  306|Drosophila melanogaster CG31251-P...    56   5e-08
BT022652-1|AAY55068.1|  538|Drosophila melanogaster IP12095p pro...    29   6.2  
AY095524-1|AAM12255.1| 1258|Drosophila melanogaster LD41783p pro...    29   6.2  
AY058725-1|AAL13954.1|  548|Drosophila melanogaster LD46533p pro...    29   6.2  
AE014297-4620|AAN14239.2|  536|Drosophila melanogaster CG31524-P...    29   6.2  
AE014297-4619|ABI31221.1|  535|Drosophila melanogaster CG31524-P...    29   6.2  
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    29   6.2  
AE014134-2857|AAF53621.1|  548|Drosophila melanogaster CG6453-PA...    29   6.2  
AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-P...    28   8.2  

>AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear
           migration protein NudC protein.
          Length = 332

 Score =  147 bits (357), Expect = 8e-36
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           VGIKGQ  IIDGEL  +VK EES WVLQD + ++I L+K+NKMNWW RLVTTDPEISTRK
Sbjct: 210 VGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKINKMNWWSRLVTTDPEISTRK 269

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
           INPE SKLSDLDGETR +VEKMMYD+ +K+
Sbjct: 270 INPESSKLSDLDGETRSMVEKMMYDQRQKE 299



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 26/35 (74%), Positives = 34/35 (97%)
 Frame = +3

Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKC 359
           QRQKE+GLPTS+++KKQ++L+KF +QHPEMDFSKC
Sbjct: 295 QRQKELGLPTSEDRKKQDILEKFKQQHPEMDFSKC 329


>AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p
           protein.
          Length = 332

 Score =  147 bits (357), Expect = 8e-36
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           VGIKGQ  IIDGEL  +VK EES WVLQD + ++I L+K+NKMNWW RLVTTDPEISTRK
Sbjct: 210 VGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKINKMNWWSRLVTTDPEISTRK 269

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
           INPE SKLSDLDGETR +VEKMMYD+ +K+
Sbjct: 270 INPESSKLSDLDGETRSMVEKMMYDQRQKE 299



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 26/35 (74%), Positives = 34/35 (97%)
 Frame = +3

Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKC 359
           QRQKE+GLPTS+++KKQ++L+KF +QHPEMDFSKC
Sbjct: 295 QRQKELGLPTSEDRKKQDILEKFKQQHPEMDFSKC 329


>AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA
           protein.
          Length = 332

 Score =  147 bits (357), Expect = 8e-36
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           VGIKGQ  IIDGEL  +VK EES WVLQD + ++I L+K+NKMNWW RLVTTDPEISTRK
Sbjct: 210 VGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKINKMNWWSRLVTTDPEISTRK 269

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
           INPE SKLSDLDGETR +VEKMMYD+ +K+
Sbjct: 270 INPESSKLSDLDGETRSMVEKMMYDQRQKE 299



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 26/35 (74%), Positives = 34/35 (97%)
 Frame = +3

Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKC 359
           QRQKE+GLPTS+++KKQ++L+KF +QHPEMDFSKC
Sbjct: 295 QRQKELGLPTSEDRKKQDILEKFKQQHPEMDFSKC 329


>BT023804-1|AAZ66311.1|  306|Drosophila melanogaster RE67940p
           protein.
          Length = 306

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 27/77 (35%), Positives = 46/77 (59%)
 Frame = +1

Query: 16  QPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEP 195
           + +I++G L   +K +E+ W +   R L+I+ +K  ++ WW RL   DPEI ++KI  E 
Sbjct: 181 ETIILEGNLSQRIKHKEAVWTIDQNR-LIISYDKAKEL-WWDRLFEGDPEIDSKKIECE- 237

Query: 196 SKLSDLDGETRGLVEKM 246
             + DL  ET+  +EK+
Sbjct: 238 RYIDDLPEETQATIEKL 254


>AE014297-2393|AAN13748.2|  306|Drosophila melanogaster CG31251-PA
           protein.
          Length = 306

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 27/77 (35%), Positives = 46/77 (59%)
 Frame = +1

Query: 16  QPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEP 195
           + +I++G L   +K +E+ W +   R L+I+ +K  ++ WW RL   DPEI ++KI  E 
Sbjct: 181 ETIILEGNLSQRIKHKEAVWTIDQNR-LIISYDKAKEL-WWDRLFEGDPEIDSKKIECE- 237

Query: 196 SKLSDLDGETRGLVEKM 246
             + DL  ET+  +EK+
Sbjct: 238 RYIDDLPEETQATIEKL 254


>BT022652-1|AAY55068.1|  538|Drosophila melanogaster IP12095p
           protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 139 GRLVTTDPEISTRKINPEP--SKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKRNKKY 312
           G++  T P  +   +N +   +   DL  +  G  EK+ Y  +  +W   Q+  + +K  
Sbjct: 22  GQIEATQPRFARSVVNMDDLLNMEDDLVSKLEGYAEKLSYKANTIRWGIQQMREQLDKSK 81

Query: 313 SRNSWNNIQRWT 348
              S++   R++
Sbjct: 82  KEQSFDLFNRYS 93


>AY095524-1|AAM12255.1| 1258|Drosophila melanogaster LD41783p protein.
          Length = 1258

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 225  TWSS*KDDVRQRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKCNSTKVL 377
            T SS +DD R R+K +   T  +   +E++++ +++  EMD  +  + KV+
Sbjct: 910  TSSSGEDDARIRRKCIAPHTKTKPTLEEIIERKLKKSIEMDLPEKTTEKVM 960


>AY058725-1|AAL13954.1|  548|Drosophila melanogaster LD46533p
           protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 148 VTTDPEISTRKINPEPSKLSDLDGETRG 231
           V   PE++T  I P P KLS+   E  G
Sbjct: 314 VAQQPEVTTESIQPTPPKLSEEQAELAG 341


>AE014297-4620|AAN14239.2|  536|Drosophila melanogaster CG31524-PA,
           isoform A protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 139 GRLVTTDPEISTRKINPEP--SKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKRNKKY 312
           G++  T P  +   +N +   +   DL  +  G  EK+ Y  +  +W   Q+  + +K  
Sbjct: 19  GQIEATQPRFARSVVNMDDLLNMEDDLVSKLEGYAEKLSYKANTIRWGIQQMREQLDKSK 78

Query: 313 SRNSWNNIQRWT 348
              S++   R++
Sbjct: 79  KEQSFDLFNRYS 90


>AE014297-4619|ABI31221.1|  535|Drosophila melanogaster CG31524-PB,
           isoform B protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 139 GRLVTTDPEISTRKINPEP--SKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKRNKKY 312
           G++  T P  +   +N +   +   DL  +  G  EK+ Y  +  +W   Q+  + +K  
Sbjct: 19  GQIEATQPRFARSVVNMDDLLNMEDDLVSKLEGYAEKLSYKANTIRWGIQQMREQLDKSK 78

Query: 313 SRNSWNNIQRWT 348
              S++   R++
Sbjct: 79  KEQSFDLFNRYS 90


>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 225  TWSS*KDDVRQRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKCNSTKVL 377
            T SS +DD R R+K +   T  +   +E++++ +++  EMD  +  + KV+
Sbjct: 910  TSSSGEDDARIRRKCIAPHTKTKPTLEEIIERKLKKSIEMDLPEKTTEKVM 960


>AE014134-2857|AAF53621.1|  548|Drosophila melanogaster CG6453-PA
           protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 148 VTTDPEISTRKINPEPSKLSDLDGETRG 231
           V   PE++T  I P P KLS+   E  G
Sbjct: 314 VAQQPEVTTESIQPTPPKLSEEQAELAG 341


>AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-PA
           protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 67  STWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSK-LSDLDGETRGLVEK 243
           ST  +QD  N    +   N++    R VT   ++  ++IN   SK L +L G  + LVE+
Sbjct: 390 STQGVQDPPNGKTQVTNYNRVMLNHRSVTKPKDVKYKRINKAKSKSLEELRGRLKNLVER 449


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,356,943
Number of Sequences: 53049
Number of extensions: 473841
Number of successful extensions: 1416
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)