Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30405
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...   114   4e-26
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.     114   4e-26
AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical ...    31   0.46 
AC025726-7|AAK73916.2|  272|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical p...    27   9.9  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score =  114 bits (275), Expect = 4e-26
 Identities = 46/90 (51%), Positives = 69/90 (76%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           VG+K Q  I+DG+L   +K+E   WV+++G+ +++ LEK+N M WW R + +DP I+T++
Sbjct: 198 VGLKNQAPIVDGKLPHAIKVENCNWVIENGKAIVLTLEKINDMEWWNRFLDSDPPINTKE 257

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
           + PE SKLSDLDGETR +VEKMMYD+ +K+
Sbjct: 258 VKPENSKLSDLDGETRAMVEKMMYDQRQKE 287



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +3

Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
           QRQKEMGLPTSDE+KK ++L++FM+QHPEMDFS
Sbjct: 283 QRQKEMGLPTSDEKKKHDMLQQFMKQHPEMDFS 315


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score =  114 bits (275), Expect = 4e-26
 Identities = 46/90 (51%), Positives = 69/90 (76%)
 Frame = +1

Query: 1   VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
           VG+K Q  I+DG+L   +K+E   WV+++G+ +++ LEK+N M WW R + +DP I+T++
Sbjct: 198 VGLKNQAPIVDGKLPHAIKVENCNWVIENGKAIVLTLEKINDMEWWNRFLDSDPPINTKE 257

Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
           + PE SKLSDLDGETR +VEKMMYD+ +K+
Sbjct: 258 VKPENSKLSDLDGETRAMVEKMMYDQRQKE 287



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +3

Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
           QRQKEMGLPTSDE+KK ++L++FM+QHPEMDFS
Sbjct: 283 QRQKEMGLPTSDEKKKHDMLQQFMKQHPEMDFS 315


>AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical
           protein Y62F5A.9 protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 249 VRQRQKEMGLPTSDEQKKQEVLKKFMEQHP---EMDFSKCNSTKVLINIINLK 398
           + Q  K+M     DE K Q VL KFME  P   + DF +    KV ++ I  K
Sbjct: 56  IHQLSKDMVSNDYDEDKVQRVLDKFMESLPADQKKDFGRLYFDKVKLDYITSK 108


>AC025726-7|AAK73916.2|  272|Caenorhabditis elegans Hypothetical
           protein Y71G12B.17 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 215 SRSDSFDGSGLIFLVDISGSVVTSRPHQFILFTFSKLISRLR 90
           SR+++  G G+ FLV    +  T RP Q +  T++K I RLR
Sbjct: 29  SRNETGGGEGVEFLVQEDFTSNTLRPGQTVSGTYTKKIYRLR 70


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 192  FWINFPCR-YFWVRCNKPTPPVHFVHL 115
            FWI F  + +  ++CN  T PVHFV L
Sbjct: 1624 FWITFSWKDHNLIKCNVKTIPVHFVFL 1650


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +1

Query: 160 PEISTRKIN----PEPSKLSDLDGETRGLVEKMM 249
           PE+S +K +    P PSKL  LD  TR LV ++M
Sbjct: 176 PEVSLKKSHIQKPPPPSKLESLDVLTRRLVSELM 209


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 240 KDDVRQRQKEMGLPTSDEQKKQEVLKKFMEQHPE 341
           KD     +K +G    DE+  QE L KFME++ E
Sbjct: 151 KDTEDPSKKGLGRADIDEEDMQESLFKFMEEYKE 184


>Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical
           protein F32B6.10 protein.
          Length = 562

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 RQRQKEMGLPTSDEQKKQEVLKKFMEQHPEMD 347
           R RQ+ + L  +D  K+Q   K +MEQ  E D
Sbjct: 469 RYRQRMLRLKLNDRNKQQFEAKNYMEQQIEND 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,822
Number of Sequences: 27780
Number of extensions: 257645
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)