Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30405
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27890.1 68417.m04003 nuclear movement family protein contain... 95 3e-20
At5g53400.1 68418.m06635 nuclear movement family protein contain... 94 5e-20
At5g58740.1 68418.m07358 nuclear movement family protein contain... 35 0.035
At5g59730.1 68418.m07487 exocyst subunit EXO70 family protein le... 31 0.43
At2g04280.1 68415.m00420 expressed protein 30 1.3
At5g18000.1 68418.m02111 transcriptional factor B3 family protei... 29 2.3
At4g12700.1 68417.m01994 expressed protein 29 3.0
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 29 3.0
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s... 29 3.0
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 28 5.3
At4g00440.1 68417.m00061 expressed protein 27 7.0
At2g37310.1 68415.m04576 pentatricopeptide (PPR) repeat-containi... 27 7.0
At1g75020.2 68414.m08712 phospholipid/glycerol acyltransferase f... 27 7.0
At1g75020.1 68414.m08711 phospholipid/glycerol acyltransferase f... 27 7.0
At5g56840.1 68418.m07092 DNA-binding family protein contains Pfa... 27 9.3
>At4g27890.1 68417.m04003 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 293
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/90 (47%), Positives = 61/90 (67%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
VG+KGQ LI+DGE VK ++ W ++D + + + L K ++M WW V +PEI T+K
Sbjct: 171 VGLKGQDLIVDGEFFNSVKPDDCFWNIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQK 230
Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
+ PE SKL DLD ETR VEKMM+D+ +K+
Sbjct: 231 VEPETSKLGDLDPETRASVEKMMFDQRQKQ 260
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +3
Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
QRQK+MGLP SDE +K+++LKKFM Q+P MDFS
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFS 288
>At5g53400.1 68418.m06635 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 304
Score = 94.3 bits (224), Expect = 5e-20
Identities = 44/90 (48%), Positives = 61/90 (67%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
VG+KGQ I+DGEL VK ++ W ++D + + I L K ++M WW V +PEI T+K
Sbjct: 182 VGLKGQDPIVDGELYRSVKPDDCYWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQK 241
Query: 181 INPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
+ PE SKL DLD ETR VEKMM+D+ +K+
Sbjct: 242 VEPETSKLGDLDPETRSTVEKMMFDQRQKQ 271
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 255 QRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 353
QRQK+MGLPTS+E +KQE+LKKFM +HPEMDFS
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFS 299
>At5g58740.1 68418.m07358 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 158
Score = 35.1 bits (77), Expect = 0.035
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 1 VGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRK 180
VGIKG P ++ +L A VK + S W L+D + I L+K K W + ++
Sbjct: 56 VGIKGNPPYLNHDLSAPVKTDCSFWTLEDD-IMHITLQKREKGQTWASPILGQGQLDPYA 114
Query: 181 INPEPSKL 204
+ E +L
Sbjct: 115 TDLEQKRL 122
>At5g59730.1 68418.m07487 exocyst subunit EXO70 family protein
leucine zipper-containing protein, Lycopersicon
esculentum, PIR:S21495 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 634
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 73 WVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKL 204
WV + + + +K K+ W G+++ PEI T +I+PE +K+
Sbjct: 476 WVFRHEEKVKLYADKFEKLAW-GKVLDLLPEIPTDEISPEEAKV 518
>At2g04280.1 68415.m00420 expressed protein
Length = 568
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 ETRGLVEKMMYDRDRKKWDYLQVMNKRNKKY-SRNSWNNIQRWTSPNAI 363
++R L+E + R WDY V +R +K ++ W N++ TSP+A+
Sbjct: 412 KSRRLMEIVSAIASRLNWDYDAVHIERGEKARNKEVWPNLEADTSPSAL 460
>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 307
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 193 PSKLSDLDGETRGLVEKMMYDRDRKKWDYLQVMNKRNKKYSRNSWNNIQR 342
P K D+ T + K+ Y R +K WD V+ ++S W+ + +
Sbjct: 232 PKKFVDMHMPTETTMFKIHYPRGKKSWDVTYVVTDVQSRFS-GGWSRLAK 280
>At4g12700.1 68417.m01994 expressed protein
Length = 561
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 ETRGLVEKMMYDRDRKKWDYLQVMNKR-NKKYSRNSWNNIQRWTSPNAI 363
+++ L+E + R WDY + +R +K ++ W N+++ TSP++I
Sbjct: 405 KSKRLMEIVSAIASRLNWDYDAIHIERGDKARNKEVWPNLEKDTSPSSI 453
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 28 IDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLS 207
IDG LD+ +EE LQ+ N + N E+ K G TD E + + + S S
Sbjct: 355 IDGPLDSPESVEELHEKLQEELN-IDNEERDVKKEVVGEADETDDEYFVAEEDMQGSSES 413
Query: 208 DLDGETRGLVEKMMYDRDRKK 270
+ + + L++KM+ + K+
Sbjct: 414 EDEDDEMTLLKKMVSGQKNKQ 434
>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 552
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 414 VTLYIHCCSCFNIFFASGNSDVLYVKAILRKI 509
V +YI CC+C+ +FF GN+ +LY+ ++ +
Sbjct: 512 VGIYILCCACYGLFF--GNT-LLYLYLFMQAV 540
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 112 EKVNKMNWWGRLVTT 156
EKV KMNWWGRL +T
Sbjct: 1138 EKV-KMNWWGRLRST 1151
>At4g00440.1 68417.m00061 expressed protein
Length = 831
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 91 RNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDRDRKK 270
RN+ I + K + ++ D EI ++ N E +LSD + E R + ++ RKK
Sbjct: 74 RNITITIIKPSVKKLIAEELSIDKEIKKQRENAEAGQLSDSELEGRRRKNQRRKNKTRKK 133
>At2g37310.1 68415.m04576 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 306 EVLKKFMEQHPEMDFSKCNS 365
EV KK +E H +MD S CN+
Sbjct: 255 EVHKKMIENHIQMDLSLCNA 274
>At1g75020.2 68414.m08712 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 378
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 318 KFMEQHPEMDFSKCNSTKVLINIINLKYT*PPVTLYIHCCSCFNIF 455
KF Q PE + S +I+L +TLY H SCF ++
Sbjct: 302 KFPNQRPEEELSVLKCIATFAGVISLTVVFIYLTLYSH--SCFKVY 345
>At1g75020.1 68414.m08711 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 378
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 318 KFMEQHPEMDFSKCNSTKVLINIINLKYT*PPVTLYIHCCSCFNIF 455
KF Q PE + S +I+L +TLY H SCF ++
Sbjct: 302 KFPNQRPEEELSVLKCIATFAGVISLTVVFIYLTLYSH--SCFKVY 345
>At5g56840.1 68418.m07092 DNA-binding family protein contains Pfam
domains, PF00249: Myb-like DNA-binding domain and
PF00098: Zinc knuckle
Length = 233
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 73 WVLQDGRNLLINLEKVNKMNWWG 141
W ++ R LI LEK+ K +W G
Sbjct: 93 WTAEEHRTFLIGLEKLGKGDWRG 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,923
Number of Sequences: 28952
Number of extensions: 231170
Number of successful extensions: 654
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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