Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30404
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 56 1e-09
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 54 6e-09
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 33 0.015
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 26 1.3
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 1.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 2.3
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 3.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 3.0
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 24 5.3
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 24 5.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 5.3
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 7.0
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 23 9.2
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 23 9.2
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 56.4 bits (130), Expect = 1e-09
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +2
Query: 8 DTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMY 115
+TI+WLD N A K+EYE KQKELEG+ NPI+ K+Y
Sbjct: 574 ETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIY 609
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 54.0 bits (124), Expect = 6e-09
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +2
Query: 8 DTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMY 115
+TI+WLDSN A K+E+E KQKELE + NPI+ K+Y
Sbjct: 574 ETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIY 609
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 32.7 bits (71), Expect = 0.015
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 8 DTIKWLDSN-QLADKEEYEHKQKELEGICNPIITKMY 115
D +WL+ + + A KEE+E ++++L+ + +PI K+Y
Sbjct: 605 DVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 305 LFISIKERLQGGC---YR*VTCGVECWFN 228
L IS + G C Y VTCGV+ W+N
Sbjct: 332 LLISTAKAAAGACCGGYDGVTCGVQWWWN 360
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 126 EESPEVCRASRAEHPEPE 179
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 137 RGLLRHXGTSSLLSDCKCLPILSA-CAH 57
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 285 EVTRWLLQVGYVWCGM 238
EVT+W+L G VW G+
Sbjct: 72 EVTKWILSNGGVWNGI 87
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 3.0
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 120 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 227
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 35 QLADKEEYEHKQKELEGICNPI 100
+L KE+Y+ KEL+ +CN +
Sbjct: 109 KLPTKEQYQAYVKELKPVCNEL 130
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 198 EALAPPSRRSIKPTFH 245
+ L P +RSIKP FH
Sbjct: 142 QTLIPSQQRSIKPPFH 157
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 5.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 168 PEPEVPPPGLEALAPP 215
P P PPPG+ PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 168 PEPEVPPPGLEALAPP 215
P+P +PPP APP
Sbjct: 103 PQPHIPPPRKSDEAPP 118
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 126 EESPEVCRASRAEHPEPEVP 185
++ P RASRA EP+ P
Sbjct: 238 DKGPAAARASRAAAEEPQAP 257
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 183 PPPGLEALAPPSRRSIKP 236
PPP L+PP RR P
Sbjct: 170 PPPKRRTLSPPPRRLADP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,535
Number of Sequences: 5004
Number of extensions: 18525
Number of successful extensions: 71
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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