Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30404
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 65 2e-11
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 4e-10
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 48 1e-06
SB_17273| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 0.23
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 29 0.94
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 28 2.2
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 28 2.2
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 2.9
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 27 5.0
SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 26 6.6
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_59397| Best HMM Match : SPOR (HMM E-Value=9.3e-14) 26 6.6
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 26 6.6
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042) 26 8.8
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 26 8.8
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 26 8.8
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 64.9 bits (151), Expect = 2e-11
Identities = 24/38 (63%), Positives = 33/38 (86%)
Frame = +2
Query: 2 CNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMY 115
C + +KWLD+NQ A+K+E+E+ QKELE +CNPIITK+Y
Sbjct: 576 CTEVLKWLDTNQTAEKDEFEYHQKELEKVCNPIITKLY 613
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 60.1 bits (139), Expect = 4e-10
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 2 CNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMY 115
C T+ WL+ NQ A+KEE + QKELEG+CNPIITK+Y
Sbjct: 668 CKATLDWLEHNQSAEKEEIDAHQKELEGVCNPIITKLY 705
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 48.4 bits (110), Expect = 1e-06
Identities = 16/36 (44%), Positives = 29/36 (80%)
Frame = +2
Query: 8 DTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMY 115
+ + WL+ N LA+KEE+E ++KEL+ +C+PI+ K++
Sbjct: 577 EVLNWLEKNSLAEKEEFEEQEKELQRVCSPIMAKVH 612
>SB_17273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 CNDTIKWLDSN-QLADKEEYEHKQKELEGICNPIITKM 112
C++ +WL++N A EE ++++L G+ PI++K+
Sbjct: 7 CDEKSEWLENNADTASLEEIVKQKEDLAGVLQPILSKL 44
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 CNDTIKWLDSN-QLADKEEYEHKQKELEGICNPIITKM 112
C++ +WL++N A EE ++++L G+ PI++K+
Sbjct: 772 CDEKSEWLENNADTASLEEIVKQKEDLAGVLQPILSKL 809
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 29.1 bits (62), Expect = 0.94
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 123 PEESP--EVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPT 239
PE+ P EV A R E P+ E PP +PP ++ KPT
Sbjct: 771 PEQPPIGEVESAVRREQPKSEKTPPSTTP-SPPPKQPSKPT 810
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 168 PEPEVPPPGLEALAPPSRRSIKP 236
P+P+ PPPG PPS + P
Sbjct: 28 PKPDTPPPGTNIPTPPSPNTPPP 50
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 182 HLRLRVLRPGSPAYLRGLLRHXGTSSLLSDCKCLPILSACAH 57
HL +RVL P P L LS C CLP+ +C H
Sbjct: 1140 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVH 1177
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 182 HLRLRVLRPGSPAYLRGLLRHXGTSSLLSDCKCLPILSACAH 57
HL +RVL P P L LS C CLP+ +C H
Sbjct: 1177 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVH 1214
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +3
Query: 168 PEPEVPPPGLE-ALAPPSRRSIKPTFH 245
P P PPP L A APP R P H
Sbjct: 425 PPPPPPPPALRLACAPPRLRFTSPVLH 451
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 111 CTXVPEESPEVCRASRAEHPEPEVPPPGLEALAPP 215
C +P P P P PPPG L PP
Sbjct: 722 CAGLPPPPPSPQPGCAGLPPPPPPPPPGCAGLPPP 756
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 123 PEESPEVCRASRAEHPEPEVPPPGLEALAPP 215
P P + + P P PPPG L PP
Sbjct: 698 PPPPPPLLSGTLPMPPPPPPPPPGCAGLPPP 728
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 123 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPT 239
P + P R SR E P PE PP L+ LA P+ + +P+
Sbjct: 19 PAKKPPPRRRSR-ETP-PETPPVQLKHLAGPAEKPHRPS 55
>SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 114 TXVPEESPEVCRASRAEHPEPEVPPPGLE--ALAPPS--RRSIKPTFH 245
T VP++ PE + PEP + P E A P S RRS +P H
Sbjct: 1244 TTVPKQIPEEFKEPEITVPEPSLEPKKTELPASEPASTLRRSTRPKPH 1291
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 14 IKWLDSNQLADKEEYEHKQKELEGICNPIITK 109
++W D D EY+ + ++E N ++TK
Sbjct: 805 MQWKDKMSQKDSMEYKQTRSKIESAINNVVTK 836
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 123 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSR 221
P +P RA+ P+P V P A APP R
Sbjct: 220 PRPAPARDRAASGPGPKPAVKPRDRLATAPPGR 252
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 144 CRASRAEHPEPEVPPPGLEALAPPSRRSIKP 236
C A A+ P+ +VPPP APP + P
Sbjct: 92 CNAKPAQ-PDTDVPPPPATTSAPPPPTTTAP 121
>SB_59397| Best HMM Match : SPOR (HMM E-Value=9.3e-14)
Length = 226
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 168 PEPEV--PPPGLEALAPPSRRSIKP 236
PE EV P G+E +APP+++ + P
Sbjct: 91 PESEVILPQQGIEPVAPPAQKPVTP 115
>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 273
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 123 PEE-SPEVCRASRAEHPEPEVPPPGLEALAPPS 218
PEE SP+ + +HPE E P + PPS
Sbjct: 70 PEEPSPDDQLPTGGDHPETEFEAPASDTAPPPS 102
>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
Length = 440
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 129 ESPEVCRASRA-EHPEPEVPPPGLEALAPPSRRS 227
E P V + R E +P PPP APP ++
Sbjct: 336 EPPNVTKPDRTTEQTQPSPPPPETVTTAPPLHKT 369
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 VPEESPEVCRASRAEHPEPEVPP-PGLEALAPPS 218
VP ++P ++S A +P P+ PP P ++ P+
Sbjct: 789 VPTQAPTEMKSSTARNPPPKKPPNPTKQSATAPT 822
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 153 SRAEHPEPEVPPPGLEALAPPSRRSIKP 236
S + P P VPPP + ++ P S + P
Sbjct: 241 SNIKPPPPPVPPPTIPSVPPGSETYVPP 268
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Frame = +2
Query: 2 CNDTIKWLDSN------QLADK-EEYEHKQKELEGI 88
C TIK LDSN Q+AD+ EE + ++ELE +
Sbjct: 198 CEATIKTLDSNLKDLRQQVADRDEELNNNRQELESV 233
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 168 PEPEVPPPGLEALAPPSRRSI 230
P P PPP LE APP S+
Sbjct: 202 PPPPPPPPILELAAPPPPGSV 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,352,878
Number of Sequences: 59808
Number of extensions: 168192
Number of successful extensions: 704
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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