Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30403
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 4e-15
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.17
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.29
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.89
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 2.1
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.1
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.7
SB_28790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 29 3.6
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 29 3.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 4.8
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 28 6.3
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 6.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 8.3
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 8.3
SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 27 8.3
SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39) 27 8.3
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 78.2 bits (184), Expect = 4e-15
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +1
Query: 241 LHQQDFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQT 420
++++ SDGL+GLYRGF +S GII+YR YFG YDT + +L ++ +VIS+ +
Sbjct: 162 VYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG-EDAGVVISFVLGYG 220
Query: 421 VTTVAGIISYPFDTVR 468
VT AG+ SYP DT+R
Sbjct: 221 VTVSAGLASYPIDTIR 236
Score = 64.1 bits (149), Expect = 8e-11
Identities = 40/81 (49%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +2
Query: 2 RYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXXXTSLCFVYPLDFAR 178
RYFPTQALNFAFKD+ K +F KKT F SL FVY LD+ R
Sbjct: 82 RYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFVYSLDYCR 138
Query: 179 TRLAAD--VGKGDGQREFSGL 235
TRLA D VGK G+R+F+G+
Sbjct: 139 TRLANDAKVGKKGGERQFNGM 159
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 259 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 369
K++G+ L++G G ++ G+ RA YF Y + ML
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 259 KSDGLIGLYRGFGVSVQGIIIYRASYFGFY---DTARGMLPDPKNTPIVISWAIAQTVTT 429
+ +G++ LY+G S G+ + F Y D +P TPI + +
Sbjct: 204 REEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPICM-FVNGCVAGA 262
Query: 430 VAGIISYPFDTVR 468
A +S+PFDT+R
Sbjct: 263 FAHTLSHPFDTIR 275
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA-IAQTVTTV 432
+K +G+ ++G GVS + Y A + ++ L DP N + S + +A T +T+
Sbjct: 105 YKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGSMLAGTSSTL 164
Query: 433 AGIIS-YPFDTVRS 471
+++ YP + +++
Sbjct: 165 IAMVTVYPCEVIKT 178
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 30.7 bits (66), Expect = 0.89
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +1
Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKN------TPIVISWAIAQ 417
F S+GL G +RG ++ I A YFG + +L PK +PI + ++
Sbjct: 308 FHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELL-TPKGEHVDNLSPIRLFFS-GG 365
Query: 418 TVTTVAGIISYPFDTVRS 471
T++ I++YP D V+S
Sbjct: 366 IAGTLSWILTYPVDMVKS 383
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGM-LPDPKNTP----IVISWAIAQT 420
++ +G+ YRG S+ GII Y Y+T + L KN +++ A
Sbjct: 277 YQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADPGVLVLLACGTA 336
Query: 421 VTTVAGIISYPFDTVRS 471
+T + SYP VR+
Sbjct: 337 SSTCGQLASYPLSLVRT 353
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 75
+ RD RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 234 RPENSRWPSPLPTSAARRVRAKSRGYTK 151
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML--PDPKNTPIVISWAIAQTVTT 429
FK++G+ +Y+G + + + + G YD + M D +N I+ A + T
Sbjct: 77 FKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKILKKIAASITTGI 136
Query: 430 VAGIISYPFDTVR 468
+A ++ P + V+
Sbjct: 137 MAVSVAQPTEVVK 149
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 140 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCIS 250
T+ YPLD R+RLA V + G + CIS
Sbjct: 77 TACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS 113
>SB_28790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 474 CATDCVEGIGDDTGDCGYGLSDGPADYNG 388
C D +G+G D G CG G +G D +G
Sbjct: 22 CGGDGGDGVGGDGGCCGDGEGNGDGDGDG 50
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 268 GLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAG--- 438
G+ G Y+G ++ I +FGFY+ + +L T +S T + G
Sbjct: 259 GIRGCYQGLSATLVRNIPANGFFFGFYEFTKNLLTPEGGTVNDVSPLGLLTSGAMGGFFY 318
Query: 439 -IISYPFDTVRSA 474
++YP D V+S+
Sbjct: 319 WFLTYPTDLVKSS 331
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 200 RHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRRGTPACT 45
R R RD RSR R + RR R +RS R S +HR + +CT
Sbjct: 321 RSRSRDRR-RSRSRERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCT 371
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 194 RRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTASSCQHRRGTP 54
R+ + R +GG R+T+ ++H R +PD +R+ R R+GTP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP-----RKGTP 907
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = -1
Query: 239 FRDRRIHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 63
+RD+R H P HRR RSR +RS R RR R P R R+ S H R
Sbjct: 206 YRDQR-RRSHSPAHHRRS----RSRSRSRSPRR--RRRSRSP---RRRRRSRSPSPHHR 254
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 518 SCTDIALGTTRLHHHALRTVSK 453
S T L TT HHH+L+TV+K
Sbjct: 96 SATSPPLLTTHAHHHSLQTVTK 117
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 518 SCTDIALGTTRLHHHALRTVSK 453
S T L TT HHH+L+TV+K
Sbjct: 1643 SATSPPLLTTHAHHHSLQTVTK 1664
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -1
Query: 197 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRRGTPACTCP 39
HR+ + RSR R R+ R R +SSC+ RR P
Sbjct: 275 HRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSP 327
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 107 QRSNARTASSCQHRRGTPACTCP 39
Q + R S CQ RRG C CP
Sbjct: 934 QLVSCRFYSKCQRRRGGAQCVCP 956
>SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 215
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 236 RDRRIHAGHLPYRHRR--RDGYVRSRGGTRSTERWLRRHHRRPDYQRSNA 93
RDRR + R R RD RSR +R R R HR+ D R ++
Sbjct: 24 RDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 73
>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
Length = 258
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -1
Query: 227 RIHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRH-HRRPDYQRSNARTASSCQHRRG 60
R +G P + + R T+ T R P Y +S +TA + QH RG
Sbjct: 179 RAQSGAKPNQDQNRSQLSAEASPTQPTVRKAEHSIEPNPSYSKSRGKTAQASQHSRG 235
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 453 GIGDDTGDCGYGLS-DGPADYNG 388
G GD +G CGYG S G DY G
Sbjct: 179 GGGDYSGGCGYGSSYGGGGDYGG 201
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 227 RIHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRP 114
R H+G PYR R D Y R RS E R H +P
Sbjct: 479 RTHSGLKPYRCRLCDKYFAQRSLVRSHE---RTHQEKP 513
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 236 RDRRIHAGHLPYRHRR--RDGYVRSRGGTRSTERWLRRHHRRPDYQRSNA 93
RDRR + R R RD RSR +R R R HR+ D R ++
Sbjct: 1594 RDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 1643
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,136
Number of Sequences: 59808
Number of extensions: 324581
Number of successful extensions: 1161
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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