Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30403
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   139   2e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   139   2e-35
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  139 bits (336), Expect = 2e-35
 Identities = 64/84 (76%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   RYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFART 181
           RYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFART
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFART 141

Query: 182 RLAADVGKGDGQREFSGLGNCISK 253
           RLAADVGK  G+REF+GLGNC++K
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTK 165



 Score =  138 bits (333), Expect = 5e-35
 Identities = 61/71 (85%), Positives = 66/71 (92%)
 Frame = +1

Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVA 435
           FK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVA
Sbjct: 167 FKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVA 226

Query: 436 GIISYPFDTVR 468
           GI+SYPFDTVR
Sbjct: 227 GIVSYPFDTVR 237



 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 509 LYKNTIHCWATIAKTEG 559
           LYK+T+HCWATI KTEG
Sbjct: 252 LYKSTLHCWATIYKTEG 268



 Score = 27.9 bits (59), Expect = 0.076
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 471 RMMMQSGRAKSDI 509
           RMMMQSGRAKS+I
Sbjct: 239 RMMMQSGRAKSEI 251


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  139 bits (336), Expect = 2e-35
 Identities = 64/84 (76%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   RYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFART 181
           RYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFART
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFART 141

Query: 182 RLAADVGKGDGQREFSGLGNCISK 253
           RLAADVGK  G+REF+GLGNC++K
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTK 165



 Score =  138 bits (333), Expect = 5e-35
 Identities = 61/71 (85%), Positives = 66/71 (92%)
 Frame = +1

Query: 256 FKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVA 435
           FK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVA
Sbjct: 167 FKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVA 226

Query: 436 GIISYPFDTVR 468
           GI+SYPFDTVR
Sbjct: 227 GIVSYPFDTVR 237



 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 509 LYKNTIHCWATIAKTEG 559
           LYK+T+HCWATI KTEG
Sbjct: 252 LYKSTLHCWATIYKTEG 268



 Score = 27.9 bits (59), Expect = 0.076
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 471 RMMMQSGRAKSDI 509
           RMMMQSGRAKS+I
Sbjct: 239 RMMMQSGRAKSEI 251


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 306 HGHTETSVQTDQTVGLEVLLMQFPRPENS 220
           H H  T ++   TV + VLL+    P+ S
Sbjct: 126 HQHLRTHLRGTLTVNVSVLLLSLASPDES 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,267
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)