Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1F841 Cluster: PREDICTED: hypothetical protein;...    34   1.8  
UniRef50_Q64TI2 Cluster: Putative uncharacterized protein; n=1; ...    34   1.8  
UniRef50_P95538 Cluster: OrfL protein; n=17; Proteobacteria|Rep:...    33   2.4  
UniRef50_A0J3P3 Cluster: Putative uncharacterized protein precur...    31   9.5  
UniRef50_Q6R8Y2 Cluster: Minichromosome maintenance protein 5; n...    31   9.5  
UniRef50_Q5C307 Cluster: SJCHGC09392 protein; n=1; Schistosoma j...    31   9.5  

>UniRef50_UPI0000F1F841 Cluster: PREDICTED: hypothetical protein;
           n=3; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 274

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 252 KLLLKDIILNGNKVSTQDTPDFVFAEDPDEYCLGAMYKNGTDSSSGIISIALV 410
           K L   ++LN  K++  D PDF F  D DE     + ++  DS+ G+ +I +V
Sbjct: 34  KELADSLLLNHRKITVIDAPDF-FDTDHDEKTKSVIIQSLVDSAEGVDAIVVV 85


>UniRef50_Q64TI2 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 693

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +3

Query: 90  LAFKQKKHEGNYFIRVIVLWNRCIREAMLSRWRNNFTTG*MRH-RANGQHELQQWKLLLK 266
           + +KQK  EG  F+ +  L  RC+ E+     R ++++  + H  A  + +   W+ +L+
Sbjct: 129 IEYKQKSEEGKGFVTLWELLTRCVSES-----RGSYSSVYLPHVYAGSESDYTAWRNVLQ 183

Query: 267 DIILNGNKVSTQDTPDFVFAEDPDEYC 347
           D+ ++      +D       E  +E C
Sbjct: 184 DMTISEQNFFDEDDKPMKLKEVLEELC 210


>UniRef50_P95538 Cluster: OrfL protein; n=17; Proteobacteria|Rep:
           OrfL protein - Ralstonia eutropha (Alcaligenes
           eutrophus)
          Length = 240

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 200 GEIITPSGQHCFPNTTIPQH 141
           G  I P G+HCFPN T+ +H
Sbjct: 84  GVAIVPEGRHCFPNLTVEEH 103


>UniRef50_A0J3P3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella woodyi ATCC 51908|Rep:
           Putative uncharacterized protein precursor - Shewanella
           woodyi ATCC 51908
          Length = 183

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +3

Query: 159 IREAMLSRWRNNFTTG*MRHRANGQHELQQWKLLLKD 269
           ++E ++S   NN+TTG   H ANG  E +QW +++KD
Sbjct: 90  VKELLVSE-ANNYTTGEGVHSANG--EYKQWFVMVKD 123


>UniRef50_Q6R8Y2 Cluster: Minichromosome maintenance protein 5; n=2;
           Entamoeba histolytica|Rep: Minichromosome maintenance
           protein 5 - Entamoeba histolytica
          Length = 639

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 115 KEITLFVLLCCGIVVFGKQCCPDGVIISPRGKCGTEP 225
           KEI + V  CCGI+ + K C  DGV      KC  +P
Sbjct: 174 KEIAVIVPSCCGIINYPKSC--DGVSPVTGKKCPPDP 208


>UniRef50_Q5C307 Cluster: SJCHGC09392 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09392 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 455

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 49  PSACCSISPDFDYRSHSNKKNMKEITLFVLLCCGIVVFGKQCCPDGVIISPR-GKC 213
           P +CC ++PD D+R       M         CC     GK CCP G    P+ G+C
Sbjct: 45  PGSCCEVAPD-DFRCCPYTNGM---------CCSD---GKSCCPQGTKCGPKLGQC 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,512,149
Number of Sequences: 1657284
Number of extensions: 9216006
Number of successful extensions: 24851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24840
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)