Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   3.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   3.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 292 CLLRTLQILFSPKILMSIVSVPCTKTVQTLVRELSPLRLYASNHRL 429
           C L  L+   + K+L  I   P TKT   L+R ++   L  ++ +L
Sbjct: 300 CELTILEYKRTKKLLYRI---PVTKTDSMLIRNINLFSLQLAHQKL 342


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 292 CLLRTLQILFSPKILMSIVSVPCTKTVQTLVRELSPLRLYASNHRL 429
           C L  L+   + K+L  I   P TKT   L+R ++   L  ++ +L
Sbjct: 125 CELTILEYKRTKKLLYRI---PVTKTDSMLIRNINLFSLQLAHQKL 167


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 124 TLFVLLCCGIVVFGKQCCPDGVI 192
           TL + L  G + FG+    DGV+
Sbjct: 422 TLIISLVIGAIYFGQDLNQDGVM 444


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 124 TLFVLLCCGIVVFGKQCCPDGVI 192
           TL + L  G + FG+    DGV+
Sbjct: 422 TLIISLVIGAIYFGQDLNQDGVM 444


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 431 LKRWFEAYKRNGDN 390
           LK W+E  +RNG N
Sbjct: 57  LKLWWEFCQRNGHN 70


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 310 QILFSPKILMSIVSVPCTKTVQTLVRELSPLRLYASNHR 426
           Q++   K++    S+P T  VQ L    + L + A +HR
Sbjct: 224 QLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHR 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,866
Number of Sequences: 336
Number of extensions: 2410
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)