Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   1.1  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   1.4  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   4.4  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   4.4  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   7.6  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.6  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 307 LQILFSPKILMSIVSVPCTKTVQTLVRELSPLR-LYASN 420
           LQ+  SP +L   V+ PC K++  ++REL  +   Y SN
Sbjct: 178 LQVYTSPNLLR--VNAPCRKSLSEMLRELKDIEDDYGSN 214


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 354 AMYKNGT-DSSSGIISIALVCFEPSLKANDI 443
           A+YK G   +  G I I  VC +P+L+ N +
Sbjct: 134 ALYKTGLLKNPKGFIHIHFVCVDPALQGNGV 164


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 221 SVPHLPRGEIITPSGQHCFPNTTIPQHNNTNKVIS 117
           S+P  P G I++ S  +   N  + QH   N++++
Sbjct: 11  SLPSYPAGGIMSVSNSNADTNQGVTQHPLANRIVN 45


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 390 IISIALVCFEPSLKANDIETSGILTL 467
           ++ IA V  E SL + DIET+GI+ +
Sbjct: 166 VVPIAAVEVEYSLFSRDIETNGIMDI 191


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 224 GSVPHLPRGEIITPSGQHCFPNTT 153
           G  P L +G+II   G   +P+TT
Sbjct: 90  GLAPLLEKGDIIVDGGNSHYPDTT 113


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 431 LKRWFEAYKRNGDNSRTRVCTVFVHGTETILIRIFGENKIW 309
           ++R F A+++    S+  + T F HG E +L+ +     +W
Sbjct: 363 VRRCFVAFEKGLSLSKGLLPTDFTHGYEALLLAVHSLIYMW 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,216
Number of Sequences: 5004
Number of extensions: 39986
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)