Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0358 - 24668212-24668475                                         29   1.9  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    27   7.5  
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626...    27   10.0 

>04_04_0358 - 24668212-24668475
          Length = 87

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 127 LFVLLCCGIVVFGKQC-CPDGVIISPRGKCG-TEPMVSMNCSNGSCY 261
           L +LL        + C C DG   S  G CG TE      C +G C+
Sbjct: 11  LALLLSAAAPAAAQNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPCW 57


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 228 GQHELQQWKLLLKDIILNGNKVSTQDTPD 314
           G H+    K LL+D+  N +K+   DTPD
Sbjct: 695 GYHDGSFVKNLLEDLNFNTSKIKAYDTPD 723


>07_03_0506 -
           18861787-18861917,18862017-18862201,18862542-18862613,
           18863163-18863234,18863596-18863667,18864371-18864518,
           18864864-18865922,18866663-18866762
          Length = 612

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 375 LYRFCTWHRDNTHQDLRRKQNLECPE*TPYFHSRLYLSIATSIAAVHADH 226
           ++  C W R    Q++RR Q L      PY  SR   +    +A  H  H
Sbjct: 549 VFAACWWKR---RQNIRRAQKLAAAREAPYAKSRTQFTRDMQMAKHHRPH 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,853
Number of Sequences: 37544
Number of extensions: 247836
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)