Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   1.5  
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)             28   4.4  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    27   7.7  
SB_13045| Best HMM Match : Ras (HMM E-Value=0)                         27   7.7  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  
SB_6111| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 471

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 185 PSGQHCFPNTTIPQHNNTNKVISFM 111
           P  +HC+PN TIP      K++S++
Sbjct: 181 PPYEHCYPNYTIPFSKRIEKIMSWL 205


>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 169 QCCPDGVIISPRGKCGTEPMVSMNCSNGS 255
           +CCPD  II  + K   +P+    CSNGS
Sbjct: 364 KCCPDAEIIEIKDK---DPIQKHMCSNGS 389


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -3

Query: 354  HRDNTHQDLRRKQNLECPE*TPYFHSRLY------LSIATSIAAVHADHWLCAAFTPW*N 193
            H    H   RR+++   P   PY+H   +      L I++S++       L A+ +P  N
Sbjct: 925  HHHQHHGHYRRRRHYHHPY-YPYYHQPYHHHQYHQLLISSSLSTPSTSSSLLASTSPTIN 983

Query: 192  YYAIGT 175
            Y ++GT
Sbjct: 984  YLSVGT 989


>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
          Length = 629

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 30  IVLLISTKCMLQHIARL*LSLAFKQKKHEGNYFIRVIVLWNRCIREAMLSRWRNNFT 200
           +V+L+  KC L+H+  +    A K     G  FI    L  + +R+ + +R   NFT
Sbjct: 119 VVMLVGNKCDLKHLRAVASDDAKKYGDEHGLAFIEASALDAKMLRK-LSNRLLQNFT 174


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 291 VSTQDTPDFVFAEDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSL 428
           +ST   PDF + +D +E  +    +   +S   I+ I L+CF  +L
Sbjct: 56  ISTDTDPDFRYQDDDEEEDIDG--EQELESLLEIVKITLICFIANL 99


>SB_6111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 286 IRCLLRTLQI-LFSPKILMSIVSVPCTKTVQTLVRELSPLRLY 411
           +RC+   L I L +  IL+  +S+PC  ++     + +PL LY
Sbjct: 50  LRCVTNILVIGLSAADILVGAISIPCWMSITLRQFDHAPLDLY 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,318
Number of Sequences: 59808
Number of extensions: 302504
Number of successful extensions: 805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)