Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   6.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   6.7  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 90  LAFKQKKHEGNYFIRVIV-LWNRCIREAMLSRWRNNFTTG*MRHRAN 227
           L FKQK    +    + +  WN    E +L  W+ NFT     H+AN
Sbjct: 575 LRFKQKPGRNSMKTGLDMDAWNETAAEQVLQAWQRNFTKSLYNHKAN 621


>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 339 HQDLRRKQNLECPE*TP-YFHSRLYLSIATSI 247
           H +LRRK  LEC   TP  F SRL LS+ +S+
Sbjct: 26  HLELRRKYELECSSSTPDSFPSRL-LSLTSSL 56


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 148 GIVVFGKQCCPDGVIISPRGKCGTEPMVSMNCSNGSC 258
           G    G QCC +  ++ P G C T+ +   +C+N  C
Sbjct: 87  GFECIGNQCCSEADVVQPGGDC-TDYLA--DCTNVQC 120


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = +1

Query: 139  LCCGIVVFGKQC-CPDGVIISPRGKCGTEPMVSM------NCSNG 252
            LC  +   G  C CPDG++    G C T+ + ++       C+NG
Sbjct: 4489 LCVSLPSTGFACLCPDGIVPQLDGSCATQHVEALTMPKQCKCTNG 4533


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = +1

Query: 139  LCCGIVVFGKQC-CPDGVIISPRGKCGTEPMVSM------NCSNG 252
            LC  +   G  C CPDG++    G C T+ + ++       C+NG
Sbjct: 4489 LCVSLPSTGFACLCPDGIVPQLDGSCATQHVEALTMPKQCKCTNG 4533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,676
Number of Sequences: 27780
Number of extensions: 228488
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)