Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30399
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   1.2  
At2g24320.1 68415.m02907 hypothetical protein                          29   1.6  
At5g33355.1 68418.m03959 expressed protein                             28   3.6  
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-...    28   3.6  
At5g24640.1 68418.m02910 expressed protein similar to unknown pr...    27   4.8  
At3g59930.1 68416.m06688 expressed protein                             27   6.3  
At1g23730.1 68414.m02995 carbonic anhydrase, putative / carbonat...    27   8.4  

>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 270 IILNGNKVSTQDTPDFVFA-EDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSLKANDIE 446
           ++  G K+  Q +PD  F+ + PD  CL  + + G ++S G +   ++     + AN  E
Sbjct: 343 VLFGGTKI-LQHSPDKSFSLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWE 401

Query: 447 TSGILTL 467
            SG+  L
Sbjct: 402 -SGLFIL 407


>At2g24320.1 68415.m02907 hypothetical protein
          Length = 286

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 422 WFEAYKRNGDNSRTRVCTVFV-HGTETILIRIFGENKIWSV 303
           WF+ YK N D  R   C V V HGT+  ++ +    ++W +
Sbjct: 179 WFDMYK-NIDKIRHVTCPVLVIHGTKDDIVNMSHGKRLWEL 218


>At5g33355.1 68418.m03959 expressed protein
          Length = 80

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 106 KNMKEITLFVLLCCGIVVFGKQCCPDGVIISPRGKCGTEPMVSMNCSNGSC 258
           KN+  ++  VLL   +V   +    D    +  G+CG EP    N    +C
Sbjct: 3   KNLNSVSFIVLLLVLLVASTEILKSDAACFTFLGECGPEPFTGSNADCLAC 53


>At1g71980.1 68414.m08320 protease-associated zinc finger
           (C3HC4-type RING finger) family protein identical to
           ReMembR-H2 protein JR702 [Arabidopsis thaliana]
           gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
           protease-associated (PA) domain and Pfam domain,
           PF00097: Zinc finger, C3HC4 type (RING finger);
           identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
           cds GI:6942148
          Length = 448

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 190 LRHRDSIASRIQRFHNTITR-IK*FPSCFFCLNASDNQSRAIC 65
           +R R S +SR++ FH    R +K  PS  F     DN +   C
Sbjct: 190 IRRRTSRSSRVREFHGMSRRLVKAMPSLIFSSFHEDNTTAFTC 232


>At5g24640.1 68418.m02910 expressed protein similar to unknown
           protein (gb|AAC02775.1)
          Length = 118

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 216 HRANGQHELQQ---WKLLLKDIILNGNKVSTQDTPDFVFAEDPDEY 344
           H++ G+ +LQ    W     D ++  +  S +D  D + +ED DEY
Sbjct: 73  HKSKGRRKLQPTSWWSEDKLDRLIGSDSSSAKDILDMLCSEDHDEY 118


>At3g59930.1 68416.m06688 expressed protein
          Length = 80

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 106 KNMKEITLFVLLCCGIVVFGKQCCPDGVIISPRGKCGTEPMVSMNCSNGSC 258
           KN+  ++  VLL   +V   +    D    +  G+CG EP    N    +C
Sbjct: 3   KNLNSVSFTVLLLVLLVASTEILKSDAACFTFLGECGPEPFTGSNADCLAC 53


>At1g23730.1 68414.m02995 carbonic anhydrase, putative / carbonate
           dehydratase, putative similar to SP|P27140 Carbonic
           anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate
           dehydratase) {Arabidopsis thaliana}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 258

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 73  PDFDYRSHSNKKNMKEITLFVLLCCGIVVFGKQCC 177
           P +D   HSN     E  + VL    I+V G  CC
Sbjct: 116 PPYDKTKHSNVGAALEYPITVLNVENILVIGHSCC 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,483
Number of Sequences: 28952
Number of extensions: 207735
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)