Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30398
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      237   3e-63
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   1.7  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    29   2.2  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    28   5.2  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   6.8  
12_01_0898 - 8685389-8685587,8685784-8685858,8687589-8687760,868...    27   9.0  
04_04_1680 + 35318330-35318693,35319789-35319877,35320082-353200...    27   9.0  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  237 bits (581), Expect = 3e-63
 Identities = 108/164 (65%), Positives = 134/164 (81%), Gaps = 1/164 (0%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKX 379
           V FR P+++K +KELF+  + +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E   
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 380 XDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
            DRG  ARASG++A VI HNPD   +R+KLPSGAKK++PSS RA
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRA 164


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 406 LWKLRHCDWT 435
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 346 LRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVYNSQRCTSTR 176
           +R   NR  +     C+        CVE +D   LLP LE V+++ + +S+ CTS +
Sbjct: 70  VRKRRNREELRGLFECYRRI---RLCVERKD-ARLLPELEQVYLSLIASSRGCTSVQ 122


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -3

Query: 437 CVQSQWRSFQRHVPDDLYXXFSLQDCTQWYPQA*LQQASHFQLQELLSFHNKQIGLCRAS 258
           C    W++   H+P  L    +  +C  WY  +    AS   L  L S     I + R  
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWYTTSICVAASPPDL-HLASISQSHIPVDRVH 131

Query: 257 GQ*RAPSLS 231
            +   PS+S
Sbjct: 132 CESAIPSMS 140


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 299 ATLEVGNVMPVGAMPEGTIVCNLEEKXXDRGRL-ARASGNFATVIGHNPDAKRTRVK 466
           A L+ G   P+G + E   VC L +   D  R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


>12_01_0898 -
           8685389-8685587,8685784-8685858,8687589-8687760,
           8687854-8687974
          Length = 188

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 346 LRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLEL 224
           +RH+S+  HI+  K+ F S    LA V ++   ELL  ++L
Sbjct: 48  IRHASSSGHIAKMKALFKSKPGMLASV-IQQTHELLIFVDL 87


>04_04_1680 +
           35318330-35318693,35319789-35319877,35320082-35320087,
           35320638-35321300
          Length = 373

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 496 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSIXXFLFKIAHNGTL 344
           W + L SR   + CT S+  +    G ++R  C  +++  F  ++  +  L
Sbjct: 107 WDSSLSSRYGPFQCTTSVPAMRYTHGPIARYACCDSTLQIFSIEVLQDSFL 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,847
Number of Sequences: 37544
Number of extensions: 295177
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)