Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30398
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 1e-72
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 198 2e-51
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 39 0.003
SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 7.0
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09) 27 9.3
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 268 bits (658), Expect = 1e-72
Identities = 124/164 (75%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKX 379
V FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 380 XDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
DRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNRA
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRA 164
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 198 bits (484), Expect = 2e-51
Identities = 90/122 (73%), Positives = 106/122 (86%), Gaps = 1/122 (0%)
Frame = +2
Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVM 325
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 326 PVGAMPEGTIVCNLEEKXXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 505
PVG MPEGTI+ ++EEK DRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 506 RA 511
RA
Sbjct: 121 RA 122
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +2
Query: 143 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVP-KLYTGQFVYC--GKK---AT 304
IK V + +DP R A +A+V +++L I P ++ G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 305 LEVGNVMPVGAMPEGTIVCNLEEKXXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 484
L+ G+ P+ +P GT+V N+E +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 485 KVLPS 499
K + S
Sbjct: 170 KEVSS 174
>SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 334 SNRHHISNFKSCFLSTINKLACVELRDNEE 245
+NRH I + + ST NK C +D E+
Sbjct: 196 TNRHRIGKYDATAASTKNKQKCTTTKDTEQ 225
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 227 TCMDRGSVQQPKVHLYQGHGLY 162
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 140 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 27
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 193 FGCCTLPRSIQVQDK 237
FGCC +P ++ QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196
>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
Length = 820
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Frame = +2
Query: 47 RKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVV----------KDIIHDPGRGAPL 196
R+ + ++ V H K G SL RHG + GVV K+++H G P
Sbjct: 407 REDSPAISVPHLIKDLGLVVTLSLAVKSRHGNVSGVVAVDAPLDTLMKEVVHFSTTGLPY 466
Query: 197 AVV 205
A+V
Sbjct: 467 AIV 469
>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 463 YSCTLSIRIVSNHSGEVSRG 404
Y+CTL+I + H GE+ RG
Sbjct: 11 YACTLNINVGVKHPGEMFRG 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,737
Number of Sequences: 59808
Number of extensions: 334553
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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