Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30398
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             240   3e-64
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   235   1e-62
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   233   7e-62
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    43   1e-04
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    43   1e-04
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    28   4.3  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   5.7  
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ...    27   5.7  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   5.7  
At2g42730.1 68415.m05292 F-box family protein contains F-box dom...    27   7.6  
At2g38630.1 68415.m04745 expressed protein                             27   7.6  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  240 bits (588), Expect = 3e-64
 Identities = 111/164 (67%), Positives = 135/164 (82%), Gaps = 1/164 (0%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKX 379
           V FR P++FK +KELF+  + +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E   
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 380 XDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
            DRG LARASG++A VI HNPD+  TR+KLPSG+KK++PS  RA
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRA 164


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  235 bits (576), Expect = 1e-62
 Identities = 108/164 (65%), Positives = 133/164 (81%), Gaps = 1/164 (0%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKX 379
           V FR P++FK +KELF+  + +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E   
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 380 XDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
            DRG  ARASG++A VI HNPD   +R+KLPSG+KK++PS  RA
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRA 164


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  233 bits (569), Expect = 7e-62
 Identities = 108/165 (65%), Positives = 135/165 (81%), Gaps = 2/165 (1%)
 Frame = +2

Query: 23  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 200 VVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 376
            V FR P+++  +KELF+  + +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120

Query: 377 XXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
             DRG LARASG++A VI HNP++  TRVKLPSG+KK+LPS+ RA
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRA 165


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +2

Query: 311 VGNVMPVGAMPEGTIVCNLEEKXXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
           +G+ MP+G M  GTI+ N+E       ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 491 LPSSNRA 511
           + +  RA
Sbjct: 118 INAKCRA 124


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +2

Query: 311 VGNVMPVGAMPEGTIVCNLEEKXXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
           +G+ MP+G M  GTI+ N+E       ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 491 LPSSNRA 511
           + +  RA
Sbjct: 118 INAKCRA 124


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 346  LRHSSNRH---HISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVY 203
            L+  S+RH   H+S      LS +    C+E+ D  EL P L L  IA  Y
Sbjct: 1800 LQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSP-LNLGMIASYY 1849


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 83   KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI-V 256
            K +KG  KL R      +H   +  +KD+  D GR  P+A+          ++K+LF+ +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181

Query: 257  PK 262
            PK
Sbjct: 1182 PK 1183


>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 676

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 355 NGTLRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVYNSQRCT 185
           NG    SSN++ +  F+    ST+N LA VE  ++ +     +++    +Y   +CT
Sbjct: 149 NGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSKKFYTRKVITPQPLYLLVQCT 204


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 421 GEVSRGTCQTTSIXXFLFKIAHNGTLRHSSNRHHISNF 308
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 737

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 247 ELLPCLELVWIAEVYNSQRCTSTRVM 170
           E LPCLELV I  V NS    +T  M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433


>At2g38630.1 68415.m04745 expressed protein 
          Length = 467

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 316 SNFKSCFLSTINKLACVEL---RDNEELLPCLELVWIAEVYNSQRCTSTRVMDYILNNSL 146
           +N K CFL+         L   ++N+ L+     V+ ++ Y+S +C STR+ +YIL    
Sbjct: 117 TNKKVCFLNVSPDEVIRSLFYNKNNDSLITVS--VYASDNYSSLKCRSTRI-EYILRGQA 173

Query: 145 D 143
           D
Sbjct: 174 D 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,416,645
Number of Sequences: 28952
Number of extensions: 233075
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)