Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30395
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 28 0.54
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 2.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.7
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 6.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 24 8.8
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 24 8.8
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 24 8.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 24 8.8
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 0.54
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 297 YLPVEHYDTNGERRVMLSPGQHRTASTIQAYFILASNDVIRKT 169
YLP E+ +T ER L+ ++ S Q L D++ KT
Sbjct: 168 YLPAEYIETPSERLARLNKYKNSETSNSQQSVTLPPLDIVEKT 210
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 289 RKIHRSRAPPQPQFCREVPRPRLNG 363
R HR++ P+ FC V P LNG
Sbjct: 753 RTKHRAKDDPKGSFCFSVDEPMLNG 777
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 327 LGLWWRPTPMYL-PVEHYDTNGERRVMLSPGQHRTASTIQA 208
L + + P PM L P+E Y +G ML GQ+ I++
Sbjct: 1057 LSITYMPVPMTLNPMESYINSGSLHFMLQDGQNLPIGDIRS 1097
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 309 GATTAPVLPRSTATPFEWXNSYTTQSTLRPHVSRRV 416
G TTAP P + TP SYT+ + + S V
Sbjct: 279 GKTTAPPPPHGSTTPLPAAASYTSMNMKQSSASHPV 314
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 1 VTPSAVSLTRPYYPTRGNPHSYPL*HLPTRSIDRTLNQTLYYRRESQE 144
+T AVSL P YP P S H PT S + + + ++E +
Sbjct: 401 ITDEAVSLPEPVYPNA--PTSAVSVHNPTISDEAEPTERAFLKKEKPQ 446
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 350 GRGTSRQNWGCGGALLRCIFRSSITTPT 267
G+ ++ Q+ G LLR IF+ PT
Sbjct: 66 GKASNFQSMGLNQTLLRAIFKKGFKAPT 93
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 39 SDPRKPSLIPVIASADSLNRPNT*PDTLLSPRIPRTIKSRRNMT 170
S+P KPS+ P S +++ P L S +P KS+ + T
Sbjct: 306 SEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSAT 349
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 342 TATPFEWXNSYTTQSTLRPHVSRR 413
T++P EW N Y T HV ++
Sbjct: 129 TSSPIEWNNEYKTIDGTDVHVIKK 152
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 219 YWLCDVGLDLASPVSLRWCRNARPEDTSE 305
YW+ D +D + LR RP++ S+
Sbjct: 90 YWILDTNIDFFYEIMLRQVLLKRPKEESQ 118
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 277 RHQRRETGDAKSRPTS-HSQYNPSLL 203
+HQ+ ++G++ PTS H P++L
Sbjct: 86 KHQQEDSGNSSQSPTSPHPSNQPAML 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,978
Number of Sequences: 5004
Number of extensions: 36989
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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