Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30395
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0005 + 7750243-7750545                                           30   0.94 
01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84...    29   2.2  
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24...    28   3.8  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    28   3.8  
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    27   6.6  
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394           27   6.6  
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130...    27   8.7  
03_02_0536 - 9284079-9286034                                           27   8.7  

>10_05_0005 + 7750243-7750545
          Length = 100

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 360 IQTGSRYFAAELGLWWRPTPMYLPVEHYDTNGERRVMLSPGQHRTASTIQ 211
           +  G +Y A ELG+  +P     PVE  D N  RR  L       A  +Q
Sbjct: 43  VHGGEKYGARELGVRLKPGSPTRPVEDSDPNKRRRAQLRKFHLEEAKDLQ 92


>01_01_0112 -
           838809-839748,839781-839908,840203-840274,840306-840374,
           840634-840698,840732-840907,841006-841757
          Length = 733

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 PSLSVGVVMLDRKIHRSRAPPQPQFCREVPRPRL 357
           P++S  + ML+  +   R P +P FC + P P L
Sbjct: 683 PTMSEVIEMLEGDVDGLRLPSRPFFCDDEPMPHL 716


>11_01_0031 +
           248264-248513,248519-249007,249178-249445,249631-249718
          Length = 364

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 277 VMLDRKIHRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLMSQGEWRH 423
           +M+ +KI R RA P P        P+     + +RN+ ++LMS  EWR+
Sbjct: 307 LMITKKIGRKRALPPPSAA-----PQDLAELSKRRNQVTNLMSYVEWRN 350


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 292 KIHRSRAPPQPQFCREVPRPRLNGXTAIQRNRHS 393
           +I RS  PPQP+  R+ PR  L   TA +  + S
Sbjct: 559 QILRSPPPPQPRLVRQQPRKMLPDNTAKEPGKAS 592


>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 361 HSNG-VAVLRGRTGAVVAPYSDVSSGRALRHQRR 263
           H +G VAVL  RT   V+P S  SS  A RH RR
Sbjct: 181 HRHGAVAVLSSRTA--VSPLSSSSSSPAHRHPRR 212


>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
          Length = 629

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 PSLSVGVVMLDRKIHRSRAPPQPQFCREV 342
           PS+S  + ML+R I     PP+P  C  +
Sbjct: 582 PSMSRVIEMLERSISELEMPPKPFLCSPI 610


>05_01_0184 -
           1298640-1298751,1298936-1299027,1299695-1299910,
           1300045-1300614
          Length = 329

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 23  SHDRIIRPEETLTHTRYSICRLAQSTEHLT-RHFIIAENPK 142
           SH +     E +T+ +YS C + Q++ + T +H I A +P+
Sbjct: 273 SHSKETVRLERVTYKQYSSCNIVQTSPNSTSKHIITAFSPQ 313


>03_02_0536 - 9284079-9286034
          Length = 651

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 295 IHRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLMSQGEWRHSS 429
           +HR  A   P F RE+      G   +  +   D    G W HS+
Sbjct: 93  VHRLLADGDPSFHRELLHATRRGTRLLNLSDFRDEAHSGSWDHSA 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,220
Number of Sequences: 37544
Number of extensions: 270833
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)