Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30395
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37059| Best HMM Match : PA (HMM E-Value=0.0015)                     29   2.2  
SB_23751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)         27   5.0  
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)            27   5.0  
SB_51304| Best HMM Match : SAM_decarbox (HMM E-Value=0)                27   8.8  
SB_40736| Best HMM Match : DAP10 (HMM E-Value=1.2)                     27   8.8  

>SB_37059| Best HMM Match : PA (HMM E-Value=0.0015)
          Length = 610

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 297 TSE*GATTAPVLPRSTATPFEWXNSYTTQSTLRPHVSRRV 416
           T+  G+T APV  +   TP    + + + ST R H  RRV
Sbjct: 141 TNPVGSTRAPVRRKRFGTPVGDPSKFVSMSTFRQHWLRRV 180


>SB_23751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 8   HLPSRSHDRIIRPEETLTHTRYSICRLAQSTEHLTRHFIIAENPKNNKVSAEHDVL 175
           H  S  HDR  R ++T       + R    T+ +TR  +IA NP   KV  +  V+
Sbjct: 2   HSGSPVHDRGRRFDQTNLRPMAEVIRQRYDTKSITRFMLIA-NPTKEKVRLKFKVM 56


>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
          Length = 645

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 395 SECRLRCIAVXPFKRGRGTSRQNWGCGG 312
           S CR+ C ++ P   G G  R++ GC G
Sbjct: 201 SRCRVVCQSLVPLHPGGGEYRRDLGCRG 228


>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 225 LCDVGLDLASPVSLRWCRNARPEDTSE*GATTAPV--LPR-STATPFEWXNSYTTQSTLR 395
           L ++G  LA P        ARP D ++      P+  LPR ST       ++  ++S +R
Sbjct: 279 LTNIGKGLAKPTF------ARPTDVAKTSGKPQPMKALPRVSTLGATRSASASCSKSPVR 332

Query: 396 PHVSRRVAT 422
           P VSRR+A+
Sbjct: 333 PMVSRRIAS 341


>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
          Length = 1451

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 243  DLASPVSLRWCRNAR-PEDTSE*GATTAPVLPRSTATPFEWXNSYTTQSTLRPHVS 407
            D++ P      R A  P +TS    TT    PR+T+   E     T+ +TL  HV+
Sbjct: 1113 DISCPTVPATVRPATLPTNTSSPPVTTTATTPRTTSYSTEMPAFITSDTTLNGHVT 1168



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 288 PEDTSE*GATTAPVLPRSTATPFEWXNSYTTQSTLRPHVS 407
           P +TS    TT    PR+T+   E     T+ +TL  HV+
Sbjct: 133 PTNTSSPPVTTTTTTPRTTSYSTEMPAFITSDTTLNGHVT 172


>SB_51304| Best HMM Match : SAM_decarbox (HMM E-Value=0)
          Length = 377

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 327 LGLWWRPTPMYLPVEHYDTN-GERRVMLSPGQHRTASTIQAYFILASNDVIRKTSCSAET 151
           L +WWRPT   L  E    N G+   M   G  R      + FI +   +I KT C   T
Sbjct: 71  LEIWWRPT---LATESILRNRGKCNKMAKKGDLREIPRESSMFI-SKERIILKT-CGTTT 125

Query: 150 LLF 142
           LL+
Sbjct: 126 LLY 128


>SB_40736| Best HMM Match : DAP10 (HMM E-Value=1.2)
          Length = 306

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 16  VSLTRPYYPTRGNPHSYP 69
           ++L+ PY P RGN H+ P
Sbjct: 84  MALSGPYQPARGNSHALP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,671
Number of Sequences: 59808
Number of extensions: 322431
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)