Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30395
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68299-1|CAA92609.1| 390|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF104859-1|AAC79091.1| 93|Caenorhabditis elegans putative RNA-... 27 4.4
AF098504-5|AAC67410.3| 322|Caenorhabditis elegans Serpentine re... 27 4.4
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 27 4.4
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ... 27 4.4
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ... 27 4.4
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 27 5.9
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 27 7.8
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 27 7.8
>Z68299-1|CAA92609.1| 390|Caenorhabditis elegans Hypothetical
protein T04B2.2 protein.
Length = 390
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 20 RSHDRIIRPEETLTHTRYSICRLAQSTEHLTRHFIIAENPKNNKVSAEH 166
R D ++R E + + + + T+ L RHF++ +P +NK EH
Sbjct: 39 REGDFLVRKTEQMPG-KVVLAMSVRVTDELCRHFMLNMDPTSNKFYFEH 86
>AF104859-1|AAC79091.1| 93|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 93
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 271 QRRETGDAKSRPTSHSQYNPSLLY 200
Q+++T A+S+PT H Q +P +++
Sbjct: 27 QQQQTPPAQSQPTGHPQQHPHMMF 50
>AF098504-5|AAC67410.3| 322|Caenorhabditis elegans Serpentine
receptor, class t protein62 protein.
Length = 322
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 44 PEETLTHTRYSICRLAQSTEHLTRHFIIAENPKNNKVSAEHDVLRMTSF 190
P+ ++T + + S H +FI+ N N+K+ +++ +M F
Sbjct: 252 PQHLWSYTALNFMWICNSAVHPIIYFIVNNNSTNSKICSKYSKFKMFEF 300
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 271 QRRETGDAKSRPTSHSQYNPSLLY 200
Q+++T A+S+PT H Q +P +++
Sbjct: 498 QQQQTPPAQSQPTGHPQQHPHMMF 521
>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2b protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 62 HTRYSICRLAQSTEHLTRHFIIAENPKNNKVSAEHDVLRMTSFEAKIK*AWI 217
H RY IC + + T H ++A N AE D LR + K++ WI
Sbjct: 95 HNRYDICNVYYRNKSGTDHTVVANTDGN---LAELDELRWFKYR-KLQYTWI 142
>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2a protein.
Length = 1127
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 62 HTRYSICRLAQSTEHLTRHFIIAENPKNNKVSAEHDVLRMTSFEAKIK*AWI 217
H RY IC + + T H ++A N AE D LR + K++ WI
Sbjct: 111 HNRYDICNVYYRNKSGTDHTVVANTDGN---LAELDELRWFKYR-KLQYTWI 158
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 280 MLDRKIHRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLMSQ 408
+LD H + APP P + P P + Q+ +H + Q
Sbjct: 368 ILDEVAHLTGAPPAPPLPAQQPPPVAHSSQIPQKQQHPQMQKQ 410
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 298 HRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLM 402
H R P P R +PRPR N + ++ D M
Sbjct: 1697 HAFRCLPTPAISRFLPRPRQNTEPLVDMDKFLDYM 1731
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 298 HRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLM 402
H R P P R +PRPR N + ++ D M
Sbjct: 1697 HAFRCLPTPAISRFLPRPRQNTEPLVDMDKFLDYM 1731
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 271 GVVMLDRKIHRSRAPPQPQFCREVPR 348
G+V LDR ++ +PP P PR
Sbjct: 391 GIVQLDRVVYPPVSPPSPPLAAAAPR 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,540
Number of Sequences: 27780
Number of extensions: 216462
Number of successful extensions: 637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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