Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30395
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17410.1 68417.m02607 expressed protein                             28   3.1  
At3g18485.1 68416.m02349 hypothetical protein                          27   4.1  
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    27   5.5  
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat...    26   9.5  
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    26   9.5  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    26   9.5  

>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 286 DRKIHRSRAPPQPQFCREVPRPRLNGXTAIQRNRHSDLMSQGEWR 420
           DR+    R+ P+ Q  R    P  +     +R+RH DL S+ + R
Sbjct: 571 DRRRRSDRSSPERQSSRRFTSPPRSSSRKSERDRHHDLDSEHDRR 615


>At3g18485.1 68416.m02349 hypothetical protein
          Length = 386

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 10  SAVSLTRPYYPTRGNPHSYPL*HLPTRSIDRTLNQTLYYRR 132
           S+ + ++  YPT+G  H YP  H+   +++ TL     ++R
Sbjct: 22  SSFTRSQIVYPTQGISHYYPSCHMMVHAMNITLCDNFDFKR 62


>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 391 SVDCVV*LFXHSNG--VAVLRGRTGAVVA 311
           S DCV+ ++   +G  V+VLRG TGAV A
Sbjct: 306 SNDCVIRVWRLPDGLPVSVLRGHTGAVTA 334


>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator of
            chromosome condensation (RCC1) family protein similar to
            zinc finger protein [Arabidopsis thaliana]
            gi|15811367|gb|AAL08940
          Length = 1124

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 243  DLASPVSLRWCR-NARPEDTSE*GATTAPVLPRSTATPFEWXNSYTTQSTLRPHVSRRVA 419
            D A+P S    R N+R  D+     TT P+    T+TP     SY  Q+        R++
Sbjct: 981  DYAAPSSNTLNRPNSRETDSDS--LTTVPMFSNGTSTPVFDSGSYRQQANHAAEAINRIS 1038

Query: 420  T 422
            T
Sbjct: 1039 T 1039


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 APPQPQFCREVPRPRLNGXTAIQR 381
           +PP PQ     PRP  NG +A QR
Sbjct: 73  SPPPPQPPPPPPRPCFNGVSAAQR 96


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
            family protein low similarity to RNA polymerase IIA
            largest subunit [Trypanosoma brucei] GI:162215; contains
            InterPro accession IPR000722: RNA polymerase, alpha
            subunit
          Length = 1453

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = -2

Query: 288  VEHYDTNGERRVMLSPGQHRTASTIQAYFILASNDVIRKTSCSAET 151
            V  + T  +  +++SP  H   + +  Y +L+S   +R+T+ + ++
Sbjct: 1253 VPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPKS 1298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,016
Number of Sequences: 28952
Number of extensions: 203111
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)