Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30394
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    30   0.20 
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   4.2  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.3  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    24   9.7  

>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 411 LHMASPCSLISQTRSCAAVDFQARVFHVDFFVFILFIRDL---VEKVVNSGYFC 259
           LH++   S  +Q  SC ++  QAR+ H D     + ++DL   + KV++ G  C
Sbjct: 229 LHLSLVRSFATQLLSCTSLLKQARIIHCDLKPENILLQDLSSPIVKVIDFGSAC 282


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 303 IRDLVEKVVNSGYFCLRYRFSSKLSDIPCSMCSASEMSPRP 181
           +R ++EK   +  FC+   + +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 439 CLVGTVLDAVTHGVSVFVDFAD 374
           CL+ + LD +T G+S F++  D
Sbjct: 265 CLITSHLDTLTKGISQFIEKRD 286


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 352 VHCSAGTCLRNQRTR 396
           VH SAG CLR ++ R
Sbjct: 30  VHISAGDCLREEQNR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,577
Number of Sequences: 5004
Number of extensions: 25826
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)