Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30394
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0520 + 9092020-9092079,9092253-9093047 29 2.4
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 2.4
06_01_0985 - 7646772-7647451,7647957-7648107 28 4.2
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 4.2
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 4.2
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 28 4.2
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 5.5
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 27 5.5
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 27 7.3
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 7.3
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 9.6
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 27 9.6
03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636 27 9.6
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 27 9.6
01_01_0299 + 2451591-2451904,2452397-2452586 27 9.6
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 2.4
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +2
Query: 200 EAEHIEHGMSESLDEKRYLRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQERVC 379
E ++ G+S + E R RQ+ E TR + KTK++T K+ A A E++
Sbjct: 108 EGTELDSGLSPA--ESRGKRQRGVEKVKRRTRKKTAKEKTKETTEKSAA----QAPEKM- 160
Query: 380 EINEHGDAMCNCIKDCPYETDSRRM 454
++N+ G A+ + C E D+ +M
Sbjct: 161 KVNDAGGALAEDV--CADEPDAEQM 183
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 243 SSKLSDIPCSMCSASEMSPRPSCSDVG 163
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLD+ ++ +PA +L+RWT +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 170 SEQLGRGDISEAEHIEHGMSESLDEKRYL 256
+E L RG + H +HG E+LDEKR L
Sbjct: 588 TEYLSRGSLYRILH-KHGARENLDEKRRL 615
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
+LDV +++ VP +L+RWT ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.5 bits (58), Expect = 5.5
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
+LDV +++++P +L+RWT ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSR 149
VLD+ +++ +P+ +L+RWT +R
Sbjct: 499 VLDLMNIKSLPSQYVLKRWTRGAR 522
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 223 SVLDVFSLRDVPAAELLRRWTFSSRGADPA 134
SVL L +P+ + RRWT ++ A P+
Sbjct: 1018 SVLSYLQLEAIPSFCIARRWTMQAKSAFPS 1047
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 188 RGRAAPTLDVQ*SWCGSCGAYAAXTSVGGANDRDHEGQRK 69
R RA P+L V W + T VGG +D + +G+R+
Sbjct: 107 RWRAHPSLHVLVGWARRMIGFRVSTPVGGCDD-EEDGRRQ 145
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -3
Query: 220 VLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHXLASAVQMTAITRAN 74
VLD +++D+P L+RW ++ P L Q+ R N
Sbjct: 611 VLDTRNIKDLPPQYFLKRWRKDAKSGSPNCSYSFPLDGDPQLVQTKRYN 659
>03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636
Length = 369
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 152 SWCGSCGAYAA 120
+WCG CGAY A
Sbjct: 11 AWCGGCGAYLA 21
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -3
Query: 193 VPAAELLRRWTFSSRGADPAVPTPHXLASAV-QMTAITRA--NARRP---FILPFDDAFL 32
+PA LL RGA P P+PH +S++ ++ TR R P F+ P L
Sbjct: 60 LPAVALLLFEASRLRGASPDGPSPHVSSSSLGRLDPTTRLVHGVREPCLNFLSPRSIEDL 119
Query: 31 CEAGGSRVES 2
GG++++S
Sbjct: 120 VFPGGTKLDS 129
>01_01_0299 + 2451591-2451904,2452397-2452586
Length = 167
Score = 26.6 bits (56), Expect = 9.6
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = -2
Query: 269 AISASGIASRPSSQTFRARCVQPPRCPRGRAAPTLDVQ*SWCGSCGAYAAXTSVGGA--- 99
A+ A G+A+ ++ T QPP P G T + G G + + GA
Sbjct: 10 ALGALGVAAISTATTLATAAFQPPPAPGGLRTTTTYNHLAVAGLAGTFLGGVVLVGASVW 69
Query: 98 ---NDRDHEGQRKKTLHLA 51
N G KK L+ A
Sbjct: 70 VSDNPAARRGTGKKLLYAA 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,859
Number of Sequences: 37544
Number of extensions: 215791
Number of successful extensions: 678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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