Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30394
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)          28   3.2  
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)                      27   5.6  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 27   7.5  
SB_8056| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_48079| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_18811| Best HMM Match : RVT_1 (HMM E-Value=0.075)                   27   7.5  
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)                  27   9.9  

>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 263 SASGIASRPSSQTFRARCVQPPRCPRGRAAPT 168
           S+SG+ SR  S T RAR   PP  P+  A+P+
Sbjct: 516 SSSGVPSRVGSATSRARQQPPPPPPQRPASPS 547


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 377  CEINEHGDAMCNCIKDCPYE 436
            CE+ ++ +A+C C KDCP E
Sbjct: 1779 CEVKDN-EAVCECPKDCPKE 1797


>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
          Length = 1170

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 357  LQRRNVSAKSTNTETPCVTASRTVPTRQ 440
            L+R  ++ +  + + PC+TASR  P+RQ
Sbjct: 940  LRRAEMNYEQKHPKAPCLTASRPPPSRQ 967


>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
          Length = 220

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 170 SEQLGRGDISEAEHIEHGMSESLDEKRYLRQK*PELTTFSTRSLMKRMKTKK 325
           S   G  +++E EH E   SE  D+K   + K  +    + R L KR++ KK
Sbjct: 115 SSDSGNSEVTEQEHDEDANSEENDDKPTRKTKLDK----AQRKLNKRLRQKK 162


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 1   GFRRDCRLLHIETHHRKAR*RVFLRWPS*SRSFAPPTLVYAA*APQDPHHDY*TSNVGAA 180
           G+R   R  H   HHR++R R   R P   R    P     + +P  PHH    S   + 
Sbjct: 205 GYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSP-SPHHRSHRSRSRSR 263

Query: 181 RPR 189
            PR
Sbjct: 264 SPR 266


>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 647

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 468 FMFLLVMDWILRRSVGKGENGIRWKFTSKLGDL 500


>SB_8056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 67  FMFLLVMDWILRRSVGKGENGIRWKFTSKLDDL 99


>SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 196 DVPAAELLRRWTFSSRGADPAVPTP 122
           +V  AE LRRWT +  G+  A P P
Sbjct: 8   NVAVAEWLRRWTRNPMGSSRAGPNP 32


>SB_48079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 49  FMFLLVMDWILRRSVGKGENGIRWKFTSKLDDL 81


>SB_37101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 11  FMFLLVMDWILRRSVGKGENGIRWKFTSKLDDL 43


>SB_18811| Best HMM Match : RVT_1 (HMM E-Value=0.075)
          Length = 203

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 95  FMFLLVMDWILRRSVGKGENGIRWKFTSKLDDL 127


>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2504

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 342 LPESPLQRRNVSAKSTNTETPCVTASRTVPTRQ 440
           LP SPL++  ++AKST    P +     +   Q
Sbjct: 875 LPSSPLKKITITAKSTTVAKPLLAPGHDISQMQ 907


>SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)
          Length = 404

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 321 FVFILFIRDLVEKVVNSGYFCLRYRFSSKLSDI 223
           F+F+L +  ++ + V  G   +R++F+SKL D+
Sbjct: 306 FMFLLVMDWVLRRSVGKGENGIRWKFTSKLDDL 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,470
Number of Sequences: 59808
Number of extensions: 221874
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)