Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30394
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    28   2.8  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      28   2.8  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    28   3.8  

>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = -1

Query: 420 LMQLHMASPC----SLISQTRSCAAVDFQARVFHVDFFVFILFIRDLVEKV---VNSGYF 262
           L +  + +PC    SLIS T    ++     +  + F+V ++F+ DLVEK+   V+   F
Sbjct: 280 LFEAAVVTPCIVVASLISMTFFIDSLSSTFLLMMLHFYVQLIFLHDLVEKLPLSVSEIPF 339

Query: 261 CLR 253
           C++
Sbjct: 340 CIK 342


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = -1

Query: 420 LMQLHMASPC----SLISQTRSCAAVDFQARVFHVDFFVFILFIRDLVEKV---VNSGYF 262
           L +  + +PC    SLIS T    ++     +  + F+V ++F+ DLVEK+   V+   F
Sbjct: 280 LFEAAVVTPCIVVASLISMTFFIDSLSSTFLLMMLHFYVQLIFLHDLVEKLPLSVSEIPF 339

Query: 261 CLR 253
           C++
Sbjct: 340 CIK 342


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 190 PAAELLRRWTFSSRGAD--PAVPTPHXLASAVQMTAI 86
           P +++ RRW  +SRG    P+  + H L  ++ M A+
Sbjct: 15  PLSKISRRWNLNSRGGAIVPSSTSVHSLGHSISMLAV 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,456,801
Number of Sequences: 27780
Number of extensions: 159862
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)