Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30394
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00905.1 68417.m00123 expressed protein                             29   1.5  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    27   4.6  
At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote...    27   4.6  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   4.6  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    27   8.1  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    27   8.1  

>At4g00905.1 68417.m00123 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 338 TLA*KSTAAQERVCEINEHGDAMCNCIKDCPYE 436
           TLA  S+++   V E+N+  +A C    DC Y+
Sbjct: 53  TLASSSSSSSSSVSEVNDSSEAPCPTYPDCGYK 85


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 215  EHGMSESLDEKRYLRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQERVCEIN 388
            E G+ E  D    L ++   LTT + + L+  +K+ K   K  + +     + +C +N
Sbjct: 1558 EEGLDEQRDLVNRLEKEILHLTTTAEKQLLSAVKSIKENLKKTSDEKDQIVDEICSLN 1615


>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 469

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 318 VFILFIRDLVEKVVNSGYFCLRYRFSSKLSDIPCSMCSASEMSP 187
           VF+ FI D+V+ ++   Y  L + F S+    PC  C   E  P
Sbjct: 13  VFVFFILDIVDFLLCFTYKTLDFFFESEWK--PCYCCPPPEAKP 54


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 97  MTAITRANARRPFILPFDDAFLCEAGGSR 11
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 197 RCPRGRAAPTLDVQ*SWCGSCGAYAAXTSVGGANDRDHEG 78
           RCP          +   C  CGA A   +  GANDR   G
Sbjct: 89  RCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGG 128


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 197 RCPRGRAAPTLDVQ*SWCGSCGAYAAXTSVGGANDRDHEG 78
           RCP          +   C  CGA A   +  GANDR   G
Sbjct: 89  RCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGG 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,997,724
Number of Sequences: 28952
Number of extensions: 148583
Number of successful extensions: 440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)