Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30393
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 81 4e-17
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 81 4e-17
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 27 0.99
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 1.7
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 4.0
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 24 5.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 5.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 7.0
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 24 7.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 9.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 23 9.2
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 81.0 bits (191), Expect = 4e-17
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +3
Query: 93 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLES 254
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL LLES
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLES 60
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 81.0 bits (191), Expect = 4e-17
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +3
Query: 93 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLES 254
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL LLES
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLES 60
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 0.99
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 123 ALSRHEQERWVYPFWLVISSLMQLTHVHQSWRVSKKK 13
A+S+ RWVYPF + S+L+ T +Q ++ K++
Sbjct: 282 AISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYKEE 317
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 110 CRESAWPYWFSGPVYSSEGRVHWGDQPSDHQK 205
C+ + WPY+ S P +E V+ + + ++K
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVYIQNSKATNKK 203
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +3
Query: 78 AKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 191
A +D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 121 ALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 148 WP*EPVRPSTFTTRARTLGLSILACNIE 65
WP +P + +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 227 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 141
+T+G D+++ PN DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.8 bits (49), Expect = 7.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 107 SCRESAWPYWF 139
+C E WPYW+
Sbjct: 824 ACVEKTWPYWW 834
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = -2
Query: 111 HEQERWVYPFWLVISSLMQLTHVHQSWRVS 22
H ++ P W+ IS ++ Q W S
Sbjct: 76 HGDNAYLLPAWIAISCFQTAAYIVQDWITS 105
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 35 LWCTCVNCIKLDITSQN 85
L C C NC KL I S N
Sbjct: 105 LECVCWNCGKLKIDSSN 121
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 141 ENQYGQALSRHEQERWVY 88
ENQY QAL E ER+ Y
Sbjct: 544 ENQYLQALQLVEDERYDY 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,756
Number of Sequences: 5004
Number of extensions: 23808
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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