Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30393
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 32 0.13
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 30 0.39
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 29 1.2
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 27 4.9
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 27 4.9
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 26 6.4
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 26 6.4
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 26 8.5
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 263 LHVRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHFHDTSK 102
L +R ++ EDV++TD + V D T + EL L L A H H K
Sbjct: 610 LPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 30.3 bits (65), Expect = 0.39
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 165 VEFIGETSRQIIRNVK---GPVRDGDILTLLESNVKLGGCDRLLQHY 296
VEF GE S IIR+VK V+D +TL+E+N L D L+ Y
Sbjct: 243 VEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANEILSSFDVRLRQY 289
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 263 LHVRFKKSEDVSVTDGSF---HVSDDLTAGLPNELDLHLSTLAL 141
LHVR K + S F HV DD+ A P+++D H L L
Sbjct: 87 LHVRRKHASLHSAGGKQFSLLHVQDDVAASSPDQMDHHTKDLLL 130
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 33 SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 212
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 33 SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 212
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 18 FSKHASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKV 167
F+K S+G V +A+ S+L + + +AR VK+ S G V++
Sbjct: 303 FAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRL 352
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 54 IALSSIL----QAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 221
+ LSS++ QAK+DK N+L+ ++L + + + E + ET + ++ K +
Sbjct: 87 LELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNEL 145
Query: 222 RD 227
RD
Sbjct: 146 RD 147
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 156 QVKVEFIGETSR-QIIRNVKGPVRD-GDILTLLES--NVKLGGCDRLLQHYCIRLRHSPV 323
Q++ IGE S ++ + G +R G+ L L S N+ + C L Y HSP
Sbjct: 1216 QLQYLTIGEMSELALVFDTAGGLRGVGEGLQGLHSIKNLNIWNCPNFLSSYSSSSHHSPF 1275
Query: 324 PST 332
PS+
Sbjct: 1276 PSS 1278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,655,018
Number of Sequences: 37544
Number of extensions: 159761
Number of successful extensions: 423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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