Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30393
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37831| Best HMM Match : MAM (HMM E-Value=0) 31 0.31
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9) 31 0.31
SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12) 29 0.71
SB_51797| Best HMM Match : Rhodanese (HMM E-Value=0.0056) 28 1.6
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 28 1.6
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 2.9
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 26 6.6
SB_24021| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 26 6.6
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
Length = 563
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 126 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESNVKLGGCD 278
G G + Q QV + + GET + ++ V+G GDI + + V CD
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI-AVDDIVVSTNSCD 200
>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
Length = 89
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 126 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESNVKLGGCD 278
G G + Q QV + + GET + ++ V+G GDI + + V CD
Sbjct: 22 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI-AVDDIVVSTNSCD 71
>SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12)
Length = 322
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 124 STFTTRA-RTLGLSILACNIELNAINTRAPKLACFEKKTQTI 2
STF TRA +LGL C+I LN AP + KKTQ +
Sbjct: 152 STFITRAWYSLGLECDRCSILLNFTFLFAPNIPVNPKKTQDL 193
>SB_51797| Best HMM Match : Rhodanese (HMM E-Value=0.0056)
Length = 304
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 263 LHVRFKKSEDVSVTDGSFHVSDDLT 189
L VR +K DVS+ DGS HV T
Sbjct: 53 LDVREQKERDVSLIDGSIHVKPSTT 77
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 219 VRDGDILTLLESNVKLGGCDRLLQHY 296
+R+ D + ++ N KLG CDR++ Y
Sbjct: 587 IREDDSMEVIMRNKKLGFCDRIMHFY 612
>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 30 ASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQC 152
A GAR + ++ + VLAR + L R G++G+C
Sbjct: 594 AVLGARAVCVAGALSARSLSGHAVLARSARALTRLGARGRC 634
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 135 QYGQALSRHEQERWVYPFWLVISSLMQLTHVHQSWR 28
QYGQ Q+ WV +W+ S ++++WR
Sbjct: 4879 QYGQVRGNRVQQMWVTAYWIRSSQDGVKFTLYRNWR 4914
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 171 FIGETSRQIIRNVKGPVRDGDILTLL 248
F GET+ QI R V GP G I T L
Sbjct: 887 FPGETNGQIDRKVAGPFAPGVIATRL 912
>SB_24021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 HASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVK-VEF 173
H+SF + + +L+ +LQ K+ P + + V G+T +K +EF
Sbjct: 42 HSSFSSFLSPSLAKVLQEKLQAPKLGRITIPVTGKTEPANMSVTLKPMEF 91
>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 860
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -3
Query: 257 VRFKKSEDVSVTDGSFHVSDDLTAGLPNE----LDLHLSTLALRTSTAKHFHDTSKNVGF 90
V FKK E ++ S + + A + ++ DL+LST L +TA H T +
Sbjct: 656 VSFKKPESDGASERSIRTVNAMLAKVVSDDQKNWDLYLSTTCLAYNTAVH-SSTGYTPSY 714
Query: 89 IHFG 78
+ FG
Sbjct: 715 LEFG 718
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 48 VLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 218
V++ L ++ A + P + R+ + R Q + +KVE + ET ++ ++GP
Sbjct: 641 VMLVLIELMPAVV-MPMMYTRIFLTVRRHNRLDQKSGIKVELVDETFTKLKGEIRGP 696
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 27 HASFGARVLIALSSILQAKMDKPNVLARVVKVLGRT 134
H+SF + + +L+ +LQ K+ P + + V G+T
Sbjct: 126 HSSFSSFLSPSLAKVLQEKLQAPKLGRITIPVTGKT 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,554
Number of Sequences: 59808
Number of extensions: 186446
Number of successful extensions: 499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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