Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30393
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 87 2e-18
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 29 0.61
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 1.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 1.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 1.9
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 27 4.3
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 25 10.0
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 87.4 bits (207), Expect = 2e-18
Identities = 45/58 (77%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILTLLES 254
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+GDILTLLES
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTLLES 57
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 23 ETRQLWCTCVNCIKLDITSQNG*TQRSCSCRES 121
ETRQ C C ++ + Q Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 6753 EPTGPEDQ---KLSKNKKGEWVYP 6773
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 7472 EPTGPEDQ---KLSKNKKGEWVYP 7492
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 10009 EPTGPEDQ---KLSKNKKGEWVYP 10029
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 156 EYTGPENQYGQALSRHEQERWVYP 85
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 156 QVKVEFIGETSRQIIRNVKGP-VRD 227
Q+ +E++G Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
protein F54F2.1 protein.
Length = 1226
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 200 DDLTAGLPNELDLHLSTLALRTSTAKHFHDTSKNVGFIH 84
DD+ AG+P DLH L L TS K + + V H
Sbjct: 262 DDIVAGVPRGNDLH-GKLVLYTSKLKMMINLTDEVSTQH 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,348,688
Number of Sequences: 27780
Number of extensions: 135003
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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