Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30393
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 251 FKKSEDVSVTDGSFHVSDDLT 189
           + KS+D+ V D S + S D+T
Sbjct: 118 YVKSDDIWVPDISVYNSGDMT 138


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 259 TLDSRRVRMSPSRTGPFTF 203
           T+ + R ++SP RT P  +
Sbjct: 408 TIQTLRPQVSPDRTSPMEY 426


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 194 LTAGLPNELDL 162
           L  GLPNEL L
Sbjct: 90  LVLGLPNELSL 100


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 133 VRPSTFTTRARTLGLSILACNIE 65
           VRP+TFT +     + + A  IE
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIE 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,433
Number of Sequences: 438
Number of extensions: 1553
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)