Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30390
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 0.98
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.7
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 3.0
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 25 4.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 4.0
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 6.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.1
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 24 9.1
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 0.98
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 95 HNRGYSDEEYETDPEPKV--KGPKPTK--EGSEDSDGSFNPSGSEEADSDFDPE 244
H+RG D+E+ P+ K KGPK + +G +D + P E D E
Sbjct: 355 HHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKE 408
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 92 VHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
++N Y D+E + E + +E ED D + N G +E +++ D E N
Sbjct: 227 INNNEYKDDESSSGSESYERDEDVDEEEEEDDDEN-NDEGDDEDENENDELRSENGSPN 284
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 125 ETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRK 265
+ P P P P G+ED+D N + S + D +G+A +
Sbjct: 29 QNQPRPATTTP-PISRGNEDADEGLNTARSFSSFQDLKGMSGDAKEQ 74
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 3.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTK-EGSEDSDG-SFNPSGSEEADSDFDPEAGEAS 259
S+EE E++ E +V+ PK SEDS+ S + EE +S+ D E + S
Sbjct: 56 SEEESESE-ESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDES 106
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
S+EE ET+ E + ++ SE S S SEE +SD +G +S
Sbjct: 88 SEEEEETESEEDSEVSDESESESESESESEEESESEE-ESDESERSGPSS 136
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 68 PRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGS 178
P + AVK NR Y++ E T P P + P ++GS
Sbjct: 53 PYQETAVKAINRLYTELESYTQP-PITQDSMPAEKGS 88
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEA 256
S+ E E+ + + ++ E +GS S E+ SD E+G++
Sbjct: 173 SESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDS 221
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 101 RGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEE 220
RG+ +E + P+ KGP+ G D+D F P GS +
Sbjct: 226 RGFGRDERK--PQFPFKGPRSQFPGEPDND-DFMPPGSSD 262
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSF------NPSGSEEADSDFDPEAGEASRKN 268
DEE ++ E K K K T D +G F N S D ++D + G + N
Sbjct: 69 DEEMPSNVELKKKSKKATPAKDSDFNGEFLFEADVNKDLSSATDMNWDFDMGSKTESN 126
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 68 PRRSAAVKVHNRGYSDEEYET 130
P RSA++ V N+ +D +ET
Sbjct: 786 PSRSASIMVANKDLNDRSFET 806
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,040
Number of Sequences: 5004
Number of extensions: 14248
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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