Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30390
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.026
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1) 33 0.080
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.99
SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053) 30 0.99
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.99
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086) 30 0.99
SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8) 29 1.7
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 29 1.7
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_55362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7) 28 3.0
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 3.0
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 28 4.0
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 28 4.0
SB_44310| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6) 27 5.3
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 27 7.0
SB_43337| Best HMM Match : RNA_pol_delta (HMM E-Value=8.5) 27 7.0
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1) 27 7.0
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 27 7.0
SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_4162| Best HMM Match : GMAP (HMM E-Value=3) 27 7.0
SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.0
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29) 27 7.0
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11) 27 9.2
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 35.1 bits (77), Expect = 0.026
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTK-EGSEDSDGSFNPSGSEEADSDF 235
GG+ + + ++G D++ + D + V G K + + +++S S N GS + D D
Sbjct: 7456 GGKKNKESKYNKKHKGSGDDDDDDDDDDDVSGDKGSGGKKNKESKYSKNHKGSGDDDDDV 7515
Query: 236 DPEAGEASRKN 268
+ G ++KN
Sbjct: 7516 SGDKGSGAKKN 7526
>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
Length = 210
Score = 33.5 bits (73), Expect = 0.080
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 137 EPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRK 265
+PK G KP KEG +DS+ + + ++ D + D EA E +K
Sbjct: 27 KPKASGRKP-KEGKDDSEEEEDDNDDDDGDIEGDEEADEPPKK 68
>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 137 EPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
+P K P+ EGS DSD + S + DS + +S
Sbjct: 99 DPSAKKPRTDAEGSSDSDSDSSDSSGSDDDSSSSSSSSSSS 139
>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
Length = 321
Score = 29.9 bits (64), Expect = 0.99
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 170 EGSEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
EGS+D D + S +++D D D AG++ +
Sbjct: 289 EGSDDDDDDSSVSADDDSDEDIDVHAGDSDNSD 321
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEA 247
DE+ + D + ++KGP T E S+D+ + E ++ + + E+
Sbjct: 186 DEDDDGDGDQEIKGPIKTAEESDDNSSGSDDESEESSEEEENQES 230
>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
Length = 809
Score = 29.9 bits (64), Expect = 0.99
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFD 238
G + +++ VK + G ++ E + D E VK + + S+D +G SEE +S +
Sbjct: 34 GKKRKKATKVKTVDAGEAEPESDEDVEAIVK--RLRADESDDEEGPHESEESEECNSS-E 90
Query: 239 PEAGEASRKN 268
PE G ++ N
Sbjct: 91 PEDGVSAGFN 100
>SB_23144| Best HMM Match : Biotin_lipoyl (HMM E-Value=9.8)
Length = 929
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
SD EY+ D + K + +G D S+++ S FD + AS
Sbjct: 23 SDAEYDGDASDQTKASETEYDGDASDDNVSGDDASDDSASSFDDVSNVAS 72
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFD 238
G + +++ VK + G ++ E + D E VK + + S+D G SEE +S +
Sbjct: 1135 GKKRKKATKVKTVDAGEAEPESDEDVEAIVK--RLRADESDDEQGPHESEESEECNSS-E 1191
Query: 239 PEAGEASRKN 268
PE G ++ N
Sbjct: 1192 PEDGVSAGFN 1201
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 316 WRTVWWVSRRIVSAAHVFSRRLTGFRIKVRIRLLRATRVE 197
WRT+W V R + F RL R + R+ +LR T E
Sbjct: 461 WRTMWSVMSRRMRRNAAFLERLKNARGRQRLEILRHTSGE 500
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 164 TKEGSEDSDGSFNPSGSEEADSDFD 238
+ E SD SFN GS+ DSD+D
Sbjct: 2144 SSEDKRMSDSSFNRGGSDSMDSDYD 2168
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 98 NRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPE 244
N G DE+ ++ E V K ++E ++ GS SGS E+DS+ + E
Sbjct: 56 NIGNDDEQRISEDEQDVDKSKESEEVADKGSGSETESGS-ESDSETESE 103
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNR-GYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEE 220
G P + H R G+S E E + K KG K + E SED + F+PSG ++
Sbjct: 180 GAPPSNKPSRPAHGRPGHSKERKEGE---KDKGRK-SDEKSEDGEKKFDPSGCDK 230
>SB_55362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 179 EDSDGSFNPSGSEEADSDFDPEAGEASRK 265
ED+D G + DSDFD E SRK
Sbjct: 7 EDNDNGDESFGDADDDSDFDAEVERKSRK 35
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 28.3 bits (60), Expect = 3.0
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +2
Query: 56 PGGRPRRSAAVKV--HNRGYSDEE--------YETDPEPKVKGPKPTKEGSEDSDGSFNP 205
P G+P A +V +N+ SDEE E++ + + EG E S GS +
Sbjct: 360 PSGKPLAMARFRVPFNNQETSDEESDGSSEVSSESESGSDAESEEGEGEGEEVSSGS-DS 418
Query: 206 SGSEEADSDFDPEAGE 253
S EE D D E GE
Sbjct: 419 STDEEGTDDGDEEGGE 434
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFD 238
G R R + R SD+ PE K+K TK ++ S E+ D D
Sbjct: 266 GSRGRSAEKSPEKQRDKSDDRRSRSPERKIKEDSVTKSDEDEGRSSERREKEEKKSRDKD 325
Query: 239 PEAGEASRKN 268
+ E RK+
Sbjct: 326 KDR-ERERKD 334
>SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7)
Length = 254
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 179 EDSDGSFNPSGSEEADSDFDPEAGEASRK 265
ED+D G + DSDFD E SRK
Sbjct: 159 EDNDNGDESFGDADDDSDFDAEVERKSRK 187
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 65 RPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEE 220
+P++ A SD++ +D E KVK K TK+ ++ S + S EE
Sbjct: 53 KPKKDAKKAATEDSSSDDDSSSDEEVKVK--KDTKKATKGSSSEDDSSSDEE 102
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 50 STPGGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADS 229
S+P R +A +V + GY+ E P P P K+ +S S + SE D
Sbjct: 285 SSPRRVKRENAESEVADTGYNSSESRGSP------PSPAKKQRSESRDSRSSQSSENRDG 338
Query: 230 DFD 238
+F+
Sbjct: 339 EFN 341
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEA-DSDFDPEAGEASRKN 268
+E E+D + + G + E S++S+GS +GS+E+ +SD E+ E++ +
Sbjct: 147 NESDESDEDDESNGSDESNE-SDESNGSDESNGSDESNESDESNESDESNESD 198
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEAD 226
G RP S K +G + E E PEP GP + GSE+ + P E AD
Sbjct: 1235 GSRPG-SKRGKSPKKGMEEPEEEKPPEPT--GPPEPEPGSEEWEYVAQPIDKEFAD 1287
>SB_44310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +2
Query: 98 NRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFD 238
+ GY D++ + D ++G D DG + G ++ D D D
Sbjct: 25 DNGYDDDDKDDDDNDGDGYGDGDRDGDGDRDGDGDDDGDDDGDGDGD 71
>SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6)
Length = 557
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 HNRGYSDEEYETDPEPKVKGPKPTKEG-SEDSDGSFNPSGSEEADSDFDPEAGE 253
HN DE+Y+ D E +D D + +EE +SD D + +
Sbjct: 338 HNNSCDDEDYDDDDVHNDDSENDDDENDDDDDDDDISREDNEEKESDGDDDGDD 391
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 152 GPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKNV 271
G T GSE+ DG FN + + PE G+ + V
Sbjct: 92 GANVTVGGSEEQDG-FNKGDPGQVGEEISPEGGDVQQNGV 130
>SB_43337| Best HMM Match : RNA_pol_delta (HMM E-Value=8.5)
Length = 121
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTK-EGSEDSDGSFNPSGSEEADSDFD 238
D++ + D E G +G +D DG + G +++DSD D
Sbjct: 79 DDDSDDDCESDDDGESDNDGDGDDDGDGDDDGEGDDDSDSDDD 121
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPE-PKVKGPKPTKEGSEDSDGSFNPSGSEEADSDF 235
G +++ V S E E+D + PK+K P G + + S E++S+
Sbjct: 71 GKAKKQNGKAPVKKAAKSSSESESDEDAPKIKAPVAKTSGKNSAKKAAESSSESESESEE 130
Query: 236 D-PEAGEA 256
+ P+ EA
Sbjct: 131 EAPKKKEA 138
>SB_37953| Best HMM Match : Myco_haema (HMM E-Value=4.1)
Length = 838
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 98 NRGYSDEEYETDPEPKVKGPK--PTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKNV 271
N G++ +T+ +V TKE G N +GS+ + P+AG+++ N+
Sbjct: 257 NAGFASALTDTEDHNEVSKANNLDTKEHGVQDAGRHNEAGSDNKPKEDSPKAGDSAGANM 316
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 125 ETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGE 253
+ D K+K K + ++D+DG N + ++ D D D G+
Sbjct: 362 DIDDYSKLKKSKQSLADADDNDGGPNDNDGDDNDDDDDDNYGD 404
>SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 95 HNRGYSDEEYETDPEPKVKGPKPTKEGSE 181
+N G D++ E P+P + P P G E
Sbjct: 72 NNNGNKDKDKEVGPDPLISEPAPVIRGRE 100
>SB_4162| Best HMM Match : GMAP (HMM E-Value=3)
Length = 219
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 KVKGPKPTKEGSEDSDGSFNPSGSEEADS--DFDPEAGEASRKNV 271
+V P P+ +GSEDSD S +++ D+ D +AG+ V
Sbjct: 158 EVPEPPPSAKGSEDSDSSDENYDNDDDDTGGHVDNDAGDKKGSKV 202
>SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 487
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
D E +TDPE +EG S G SGS+ SD + + S++N
Sbjct: 28 DAETQTDPEITGVDADDFEEGDYSSSG--EESGSDSDSSDEEAAGTDKSKEN 77
>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
Length = 212
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 134 PEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
P K + P P K+G D D S + EE + EA +A+
Sbjct: 151 PGEKPEAPVPNKDGKYDDDTSGEENSDEEESTTTVGEAYDAT 192
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 110 SDEEYETDPE-PKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEA 256
+D E D P+ + + ++G EDS + + S DSD + EAG A
Sbjct: 1558 NDSAVEGDESLPQGENVEQDEDGDEDSSDVESSTTSTSEDSDAEDEAGAA 1607
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +2
Query: 65 RPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPE 244
RP R ++ H R D+E E + E G + K+ ++ + S E D + D +
Sbjct: 372 RPERHVYLRRHYR--IDDEDEEETEEDQSGKEDKKDTKDEDMEKKDSRKSGEDDENVDNK 429
Query: 245 AGEASRKN 268
E KN
Sbjct: 430 KAEEKLKN 437
>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 65 RPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPE 244
R +S ++++ R D Y+ + E +K + S ++ + GSE AD D +
Sbjct: 235 REEQSDTIEINMRPVHDSIYDLNGEKMLKFEHSAQRQSLNASIGSDDGGSETADDD---Q 291
Query: 245 AGEASRK 265
G+ S+K
Sbjct: 292 GGKKSQK 298
>SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 153
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
+DE + D G EG +D+DG G ++AD D + G + N
Sbjct: 33 TDEGDDPDGRDGTDGGDDADEG-DDADGRDGTDGGDDADIGSDADGGGDEKDN 84
>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 GYSDEEYETDPEPKVKG-PKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGE 253
G +E E + E +G + +EG+E+ + N G+EE + + + E E
Sbjct: 46 GNEEENEEGNEEGNEEGNEEENEEGNEEGNEEGNEEGNEEGNEEGNEEGNE 96
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 95 HNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRK 265
+ G +E E + E +G +EG+E+ + N G+EE + + + E E +
Sbjct: 103 NEEGNEEENEEGNEEENEEG---NEEGNEEGNEKENEEGNEEGNEEGNEEGNEVGNE 156
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 98 NRGYS---DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGE 253
N GY D++ + D + G +G +D D + E+ D D D + G+
Sbjct: 2054 NHGYGPGDDDDDDDDDDDDDDGDGDDGDGDDDDDDDDDDDDDEDDDDDDDDDDGD 2108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,672,970
Number of Sequences: 59808
Number of extensions: 128143
Number of successful extensions: 1370
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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