Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30390
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 31 0.35
At3g57930.1 68416.m06457 expressed protein 31 0.46
At2g05940.1 68415.m00645 protein kinase, putative similar to aux... 30 0.81
At4g14700.1 68417.m02259 replication control protein, putative s... 29 1.1
At2g30280.1 68415.m03686 expressed protein 29 1.1
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 29 1.1
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 1.4
At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protei... 28 2.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 28 2.5
At5g22120.1 68418.m02575 expressed protein 28 3.3
At4g28980.2 68417.m04140 cyclin-dependent kinase-activating kina... 28 3.3
At4g28980.1 68417.m04139 cyclin-dependent kinase-activating kina... 28 3.3
At4g15030.1 68417.m02309 expressed protein 28 3.3
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 28 3.3
At1g78650.1 68414.m09166 expressed protein weak similarity to DN... 28 3.3
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 28 3.3
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 28 3.3
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 27 4.3
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 27 4.3
At4g10670.1 68417.m01743 transcription elongation factor-related... 27 5.7
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 5.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 5.7
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 27 7.5
At1g24706.1 68414.m03104 expressed protein 27 7.5
At4g19100.1 68417.m02818 expressed protein 26 10.0
At3g17609.2 68416.m02248 bZIP transcription factor family protei... 26 10.0
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 26 10.0
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 149 KGPKPTKEGSEDSDGSFNPSGSEEADS-DFDPEAGEAS 259
K PKP + G + DG F +G+++ D+ D D E G+ S
Sbjct: 95 KNPKPRRRGDKSGDG-FRRTGADQDDNDDGDDEVGDES 131
>At3g57930.1 68416.m06457 expressed protein
Length = 141
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 62 GRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDP 241
G+ +R A +RG +EE + + KP K+ E+ + + EE D D D
Sbjct: 6 GKGKRQNATAREDRGSGEEEKIPAFRKRGRPQKPVKDEEEEEEELVKKT-DEEEDKDDDT 64
Query: 242 EAGEASRKNV 271
S++NV
Sbjct: 65 NGSVTSKENV 74
>At2g05940.1 68415.m00645 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821
Length = 462
Score = 29.9 bits (64), Expect = 0.81
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 59 GGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFD 238
G +PR+S+ H + S+ + P P K P PT + +S + + +S
Sbjct: 396 GNKPRKSSHHHHHQQQQSNHP-RSSPSPTTKSPSPTAKSPRNSTENHRRTLRNGVNSPLR 454
Query: 239 PEAG 250
EAG
Sbjct: 455 SEAG 458
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 107 YSDEEYETDPEPKVKGPKPTKEGSEDS 187
YSDEE E D E V+G +K G +S
Sbjct: 364 YSDEEIEFDDEESVRGVSKSKRGGANS 390
>At2g30280.1 68415.m03686 expressed protein
Length = 346
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 107 YSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAG--EASRKNV 271
Y E+ + PK P+ +E E+ D + SEE S+ E+ E S+++V
Sbjct: 262 YDSEDSNAEDHPKTDYPEEEEEEEEEDDDDDDDDESEEEKSEASDESDDEETSKRHV 318
>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2138
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 116 EEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKNV 271
EE+ + P VKGPKP E N S ++ +S +DPE + S +NV
Sbjct: 1164 EEFCKENRPSVKGPKPVARSFEVDR---NHSEGKQQES-WDPEFHDISLQNV 1211
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 53 TPGGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSD 232
TP +P K + S E ++D E PTK+ S S S S+E+ +
Sbjct: 279 TPAKKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDE 338
Query: 233 FDPE 244
D E
Sbjct: 339 SDKE 342
>At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protein
contains Pfam profile PF00641: Zn-finger in Ran binding
protein and others
Length = 137
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 328 CCPSWRTVWWVSRRIVSAAHVFSRRLTGFRIK 233
C P W+T WV R+ H ++ R F+ K
Sbjct: 99 CPPGWKTGDWVCPRVGCGVHNYASRAECFKCK 130
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 107 YSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKNV 271
Y + Y D E +V+ P+ K S S S SG E+D++ E E R+NV
Sbjct: 246 YIGKSYRGDEEREVR-PRRRKSSSCSSYYSLASSGEFESDTEDQEEDVEIYRENV 299
>At5g22120.1 68418.m02575 expressed protein
Length = 383
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 137 EPKVKGPKPTKEG--SEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
EPKV+GPK G + SD ++ E+ D D E + SR++
Sbjct: 184 EPKVQGPKRRGRGTFTYKSDAMYSDRDFSESRFDDDSEDNDLSRES 229
>At4g28980.2 68417.m04140 cyclin-dependent kinase-activating kinase
1At / CDK-activating kinase 1At (CAK1) identical to
Cdk-activating kinase 1At [Arabidopsis thaliana]
gi|3218550|dbj|BAA28775
Length = 479
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 RSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEG-SEDSDGSFNPSGSEEADSDFD 238
R+ +++ N Y EE P ++ P PT G EDS +N ++DSDFD
Sbjct: 406 RATTMEMLNDKYLSEEPLPVPVSELYVP-PTMSGPDEDSPRKWNDYREMDSDSDFD 460
>At4g28980.1 68417.m04139 cyclin-dependent kinase-activating kinase
1At / CDK-activating kinase 1At (CAK1) identical to
Cdk-activating kinase 1At [Arabidopsis thaliana]
gi|3218550|dbj|BAA28775
Length = 479
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 RSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEG-SEDSDGSFNPSGSEEADSDFD 238
R+ +++ N Y EE P ++ P PT G EDS +N ++DSDFD
Sbjct: 406 RATTMEMLNDKYLSEEPLPVPVSELYVP-PTMSGPDEDSPRKWNDYREMDSDSDFD 460
>At4g15030.1 68417.m02309 expressed protein
Length = 179
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 98 NRGYSDEEYETDPEPKVKG-PKPTKEGSEDSDGSFNPSGSEEADSDF 235
NR S EY+TD E + KG + +K S D +G + + E + F
Sbjct: 129 NRSQSHSEYDTDEEDRRKGKTRKSKLESADREGKDDENFDEYMEGMF 175
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 53 TPGGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSD 232
TPG P + ++ + + + D +P G T + S+D GSF+PS D
Sbjct: 471 TPGPLP----SFQITDLNQKHQAFFLDGKPDENGNMSTLDASQDMTGSFSPSSPPHYQKD 526
>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
polymerase delta subunit 3 (DNA polymerase delta subunit
p66) (Swiss-Prot:Q15054) [Homo sapiens]
Length = 509
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 107 YSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPE 244
+SD+EYE D P D + S SG E+ D+D PE
Sbjct: 315 FSDDEYE-DVISLASPSSPKVNSRPDVELSSEDSGPEKPDADVSPE 359
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRKN 268
+EE E E + P K G E+S + S E +FD + G+ RKN
Sbjct: 83 NEETEVVTETNEEKTDPEKSGEENSG---EKTESAEERKEFDDKNGDGDRKN 131
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEASRK 265
D+E + + ++ + E S S S + S SEE +SD D E ++K
Sbjct: 231 DDEKSDEAKGEMDSAESESETSSSSASSSDSSSSEEEESDEDESDKEENKK 281
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +2
Query: 86 VKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
+ V N+ Y ++YE P PTKEG + P E P+ G+ S
Sbjct: 163 IDVENKVYGGDKYENGVITPGPVPVPTKEGFDSLKKESKPEQEEAEIILTPPDEGKTS 220
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 261 EKTCAAETIRRETHQTVLQEGQQQGEERK 347
E+T A +T ++T Q GQ++G+ER+
Sbjct: 435 EETAAPQTEAQQTEAAETQGGQEEGQERE 463
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/90 (21%), Positives = 32/90 (35%)
Frame = +2
Query: 173 GSEDSDGSFNPSGSEEADSDFDPEAGEASRKNVXXXXXXXXXXXXXXXXXXXXXXXKESR 352
GSEDSD + PS E +S+ + E E+ + + +
Sbjct: 361 GSEDSDKGYEPS-DVEVESESEDETSESESDDEEEEEDSEQESEEEKGKTWAELEREATN 419
Query: 353 LNRVAAXEQSLKATRKAKNLRVKATQSPGS 442
+R E + RK + ++ PGS
Sbjct: 420 ADREHGVESDSEEERKRRKMKAFGKSRPGS 449
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 92 VHNRGYSDEEYETDPEPKVKGPK-PTKEGSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
V ++ Y ++ T K K K P +E +E+ + G E DSD + EAG+ S
Sbjct: 859 VFHKFYVNKMTSTKQSKKKKKKKLPEEEAAEELYDVNDGDGGENYDSDVEFEAGDES 915
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 TPGGRPRRSAAVKVHNRGYSDEEYETD-PEPKVKGPKPTKEGSEDSDGSFNPSGSEEADS 229
TP +P +S ++ E + PEP P S +D S P + + D
Sbjct: 763 TPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDTSIPPPENNDDDD 822
Query: 230 DFD 238
D D
Sbjct: 823 DGD 825
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 113 DEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSGSEEA 223
DEE ++ E K P+ K+ S + + S NP+ +++A
Sbjct: 173 DEEDDSSEEETPKKPEEPKKRSAEPNSSKNPASNKKA 209
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +2
Query: 110 SDEEYETDPEPKVKGPKPTKEGSEDSDGSFNPSG------SEEADSDFDPEAGEASR 262
S E+ ETD P++ P K S+ S+ S ++ A DF + G++ +
Sbjct: 1290 SMEQKETDETPRISDENPVKPASKYSEAELKASSKRGASVNKSAKQDFGKDDGKSGK 1346
>At4g19100.1 68417.m02818 expressed protein
Length = 214
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 122 YETDPEPKVKGPKP--TKEGSEDSDGSFNPSGSEEADSDFDPEAGEASR 262
+ T PK GP P TK+ + G+ + ++ D D D E E R
Sbjct: 61 HATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109
>At3g17609.2 68416.m02248 bZIP transcription factor family protein /
HY5-like protein (HYH) nearly identical to HY5-like
protein [Arabidopsis thaliana] GI:18042111; similar to
TGACG-motif binding factor GI:2934884 from [Glycine
max]; contains Pfam profile: PF00170 bZIP transcription
factor
Length = 149
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 56 PGGRPRRSAAVKVHNRGYSDEEYETDPEPKVKGPKPTKEGSEDSDGSFNP 205
P G S++ K H SDEE P+ + G S D DG NP
Sbjct: 6 PNGNSSSSSSHKKHKTEESDEELLMVPDMEAAGSTCVLSSSAD-DGVNNP 54
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 173 GSEDSDGSFNPSGSEEADSDFDPEAGEAS 259
GS S+ S + SGS +D+D D +G S
Sbjct: 455 GSSSSNSSSSDSGSCSSDTDSDSSSGRGS 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,226,004
Number of Sequences: 28952
Number of extensions: 86521
Number of successful extensions: 629
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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